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2010

Publications in refereed journals

  • Albert, B., Nadot, S., Dreyer, L., Ressayre, A. (2010) The influence of tetrad shape and intersporal callose wall formation on pollen aperture pattern ontogeny in two eudicot species. Ann Bot, 106 557–564.
  • Barriere, Y., Charcosset, A., Denoue, D., Madur, D., Bauland, C., Laborde, J. (2010) Genetic variation for lignin content and cell wall digestibility in early maize lines derived from ancient landraces. Maydica, 55 65–74.
  • Barriere, Y., Mechin, V., Denoue, D., Bauland, C., Laborde, J. (2010) QTL for Yield, Earliness, and Cell Wall Quality Traits in Topcross Experiments of the F838 x F286 Early Maize RIL Progeny. Crop Science, 50 1761–1772.
  • Bourguignon P. Y., Samal A., Kepes F., Jost J., Martin O. C.Algorithms Mol Biol, 5 20.
  • Burda, Z., Krzywicki, A., Martin, O. C.,Zagorski, M. (2010) Distribution of essential interactions in model gene regulatory networks under mutation-selection balance. Phys Rev E Stat Nonlin Soft Matter Phys, 82 011908.
  • Capelle, V., Remoue, C., Moreau, L., Reyss, A., Mahe, A., Massonneau, A., Falque, M., Charcosset, A., Thevenot, C., Rogowsky, P., Coursol, S., Prioul, J.-L. (2010) QTLs and candidate genes for desiccation and abscisic acid content in maize kernels. BMC Plant Biol, 10 2. doi: 10.1186/1471-2229-10-2.
  • Cassan, L., Moreau, L., Segouin, S., Bellamy, A., Falque, M.,Limami, A. M. (2010) Genetic map construction and quantitative trait loci (QTL) mapping for nitrogen use efficiency and its relationship with productivity and quality of the biennial crop Belgian endive (Cichorium intybus L.). J Plant Physiol, 167 1253–1263.
  • Citerne, H., Jabbour, F., Nadot, S.,Damerval, C. (2010) The Evolution of Floral Symmetry. Adv. Bot. Res. 54 85–137.
  • Chen, N. W. G., Sévignac, M., Thareau, V., Magdelenat, G., David, P., Ashfield, T., Innes, R. W.,Geffroy, V. (2010) Specific resistances against Pseudomonas syringae effectors AvrB and AvrRpm1 have evolved differently in common bean (Phaseolus vulgaris), soybean (Glycine max), and Arabidopsis thaliana. New Phytol, 187 941–956.
  • Crozet, P., Jammes, F., Valot, B., Ambard-Bretteville, F., Nessler, S., Hodges, M., Vidal, J., Thomas, M. (2010) Cross-phosphorylation between Arabidopsis thaliana sucrose nonfermenting 1-related protein kinase 1 (AtSnRK1) and its activating kinase (AtSnAK) determines their catalytic activities. J Biol Chem, 285 12071–12077.
  • Daher, Z., Recorbet, G., Valot, B., Robert, F., Balliau, T., Potin, S., Schoefs, B.,Dumas-Gaudot, E. (2010) Proteomic analysis of Medicago truncatula root plastids. Proteomics, 10 2123–2137.
  • David, P., Colas des Francs, C., Sévignac, M., Thareau, V., Macadré, C., Langin, T.,Geffroy, V. (2010) Three highly similar formate dehydrogenase genes located in the vicinity of the B4 resistance gene cluster are differentially expressed under biotic and abiotic stresses in Phaseolus vulgaris. Theor Appl Genet, 121 87–103.
  • * Duan X., Tellier A., Wan A., Leconte M., de Vallavieille-Pope C., Enjalbert J. (2010) Puccinia striiformis f.sp. tritici presents high diversity and recombination in the over-summering zone of Gansu, China. Mycologia, 102 (1) 44-53.
  • Durand, E., Tenaillon, M. I., Ridel, C., Coubriche, D., Jamin, P., Jouanne, S., Ressayre, A., Charcosset, A., Dillmann, C. (2010) Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds. BMC Evol Biol, 10 2. doi:10.1186/1471-2148-10-2
  • Fiévet, J. B., Dillmann, C., de Vienne, D. (2010). Systemic properties of metabolic networks lead to an epistasis-based model for heterosis. Theor Appl Genet, 120(2), 463–473.
  • Feria Bourrellier A. B., Valot B., Guillot A., Ambard-Bretteville F., Vidal J., Hodges M. (2010) Chloroplast acetyl-CoA carboxylase activity is 2-oxoglutarate-regulated by interaction of PII with the biotin carboxyl carrier subunit. Proc Natl Acad Sci U S A, 107 (1) 502-7.
  • Fonsêca, A., Ferreira, J., dos Santos, T. R. B., Mosiolek, M., Bellucci, E., Kami, J., Gepts, P., Geffroy, V., Schweizer, D., dos Santos, K. G. B.,Pedrosa-Harand, A. (2010) Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosome Res, 18 487–502.
  • Hoogland, C., O'Gorman, M., Bogard, P., Gibson, F., Berth, M., Cockell, S., Ekefjärd, A., Forsstrom-Olsson, O., Kapferer, A., Nilsson, M., Martínez-Bartolomé, S., Albar, J., Echevarría-Zomeño, S., Joets, J., Binz, P.-A., Taylor, C. , Dowsey, A. (2010) Guidelines for reporting the use of gel image informatics in proteomics. Nature Biotech.28(7):655-6.
  • Huang, Y.-F., Madur, D., Combes, V., Ky, C. L., Coubriche, D., Jamin, P., Jouanne, S., Dumas, F., Bouty, E., Bertin, P., Charcosset, A.,Moreau, L. (2010) The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations. Genetics, 186 395–404.
  • Junier, I., Martin, O., Képès, F. (2010) Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization. PLoS Comput Biol, 6 e1000678.
  • Levert, M., Zamfir, O., Clermont, O., Bouvet, O., Lespinats, S., Hipeaux, M. C., Branger, C., Picard, B., Saint-Ruf, C., Norel, F., Balliau, T., Zivy, M., Le Nagard, H., Cruvellier, S., Chane-Woon-Ming, B., Nilsson, S., Gudelj, I., Phan, K., Ferenci, T., Tenaillon, O.,Denamur, E. (2010) Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections. PLoS Pathog, 6 e1001125.
  • Marmagne, A., Brabant, P., Thiellement, H. , Alix, K. (2010) Analysis of gene expression in resynthesized Brassica napus allotetraploids: Transcriptional changes do not explain differential protein regulation. New Phytol, 186 216–227.
  • Montalent, P., Joets, J. (2010) EuGène-maize: A web site for maize gene prediction. Bioinformatics, 26 1254–1255.
  • Page, D., Gouble, B., Valot, B., Bouchet, J. P., Callot, C., Kretzschmar, A., Causse, M., Renard, C. M. C. G.,Faurobert, M. (2010) Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage. Planta, 232 483–500.
  • Parisod, C., Alix, K., Just, J., Petit, M., Sarilar, V., Mhiri, C., Ainouche, M., Chalhoub, B., Grandbastien, M.-A. (2010) Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytol, 186 37–45
  • Recorbet, G., Valot, B., Robert, F., Gianinazzi-Pearson, V.,Dumas-Gaudot, E. (2010) Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species. Fungal Genet Biol, 47 608–618.
  • Rhoné, B., Vitalis, R., Goldringer, I., Bonnin, I. (2010) Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection. Evolution, 4-7: 2110--2125.
  • Samal, A., Rodrigues, J. M. F., Jost, J., Martin, O. C.,Wagner, A. (2010) Genotype networks in metabolic reaction spaces. BMC Syst Biol, 4 30.
  • Santure, A. W., Ewen, J. G., Sicard, D., Roff, D. A., Moller, A. P. (2010) Population structure in the barn swallow, Hirundo rustica: A comparison between neutral DNA markers and quantitative traits. Biol J Linn Soc Lond, 99 306–314.
  • Sirichandra, C., Davanture, M., Turk, B. E., Zivy, M., Valot, B., Leung, J.,Merlot, S. (2010) The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover. PLoS ONE, 5. e13935
  • Spor, A., Dillmann, C., Wang, S., de Vienne, D., Sicard, D., Parent, E. (2010) Hierarchical Bayesian Modelling for Saccharomyces cerevisiae population dynamics. Int J Food Microbiol 142, 25-35.
  • Storlazzi, A., Gargano, S., Ruprich-Robert, G., Falque, M., David, M., Kleckner, N., Zickler, D. (2010) Recombination Proteins Mediate Meiotic Spatial Chromosome Organization and Pairing. Cell, 141 94–106.
  • Sulc, P., Wagner, A.,Martin, O. C. (2010) Quantifying slow evolutionary dynamics in RNA fitness landscapes. J Bioinform Comput Biol, 8 1027–1040.
  • Tenaillon, M. I., Hollister, J. D., Gaut, B. S. (2010) A triptych of the evolution of plant transposable elements. Trends Plant Sci, 15 471–478.
  • Truntzler, M., Barrière, Y., Sawkins, M. C., Lespinasse, D., Betran, J., Charcosset, A.,Moreau, L. (2010) Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes. Theor Appl Genet, 121(8) 1465-1482
  • Vlad, F., Droillard, M.-J., Valot, B., Khafif, M., Rodrigues, A., Brault, M., Zivy, M., Rodriguez, P. L., Merlot, S. & Laurière, C. (2010) Phospho-site mapping, genetic and in planta activation studies reveal key aspects of the different phosphorylation mechanisms involved in activation of SnRK2s. Plant J, 65(5) 778-790