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2012

Publications in refereed journals

  • Acevedo, F., Rubilar, M., Shene, C., Navarrete, P., Romero, F., Rabert, C., Jolivet, P., Valot, B. , Chardot, T. (2012) Seed oil bodies from Gevuina avellana and Madia sativa. J Agric Food Chem, 60 6994–7004.
  • Ainouche, A., Bétermier, M., Chandler, M., Cordaux, R., Cristofari, G., Deragon, J.-M., Lesage, P., Panaud, O., Quesneville, H., Vaury, C., Vieira, C. , Vitte, C. (2012) International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Mob DNA, 3 17.
  • Allard, V., Veisz, O., Kõszegi, B., Rousset, M., Le Gouis, J. , Martre, P. (2012) The quantitative response of wheat vernalization to environmental variables indicates that vernalization is not a response to cold temperature. J Exp Bot, 63 847–857.
  • Amiour, N., Imbaud, S., Clément, G., Agier, N., Zivy, M., Valot, B., Balliau, T., Armengaud, P., Quilleré, I., Cañas, R., Tercet-Laforgue, T., Hirel, B. (2012) The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. J. Exp. Bot., 63 5017–5033.
  • Arc, E., Chibani, K., Grappin, P., Jullien, M., Godin, B., Cueff, G., Valot, B., Balliau, T., Job, D. , Rajjou, L. (2012) Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release. J Proteome Res, 11 5418–5432.
  • Ashfield T., Egan A. N., Pfeil B. E., Chen N. W., Podicheti R., Ratnaparkhe M. B., Ameline-Torregrosa C., Denny R., Cannon S., Doyle J. J., Geffroy V., Roe B. A., Saghai Maroof M. A., Young N. D., Innes R. W. (2012) Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine. Plant Physiol, 159 (1) 336-54.
  • Blein-Nicolas, M., Xu, H., de Vienne, D., Giraud, C., Huet, S. , Zivy, M. (2012) Including shared peptides for estimating protein abundances: A significant improvement for quantitative proteomics. Proteomics, 12 2797–2801.
  • Bonhomme, L., Valot, B., Tardieu, F. , Zivy, M. (2012) Phosphoproteome dynamics upon changes in plant water status reveal early events associated with rapid growth adjustment in maize leaves. Mol Cell Proteomics, 11 957–972.
  • Bonneuil, C., Goffaux, R., Bonnin, I., Montalent, P., Hamon, C., Balfourier, F. , Goldringer, I. (2012) A new integrative indicator to assess crop genetic diversity. Ecol. Indic. 23 280–289.
  • Cañas, R. A., Quilleré, I., Gallais, A. , Hirel, B. (2012) Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield? New Phytol, 194 440–452.
  • Chia, J.-M., Song, C., Bradbury, P. J., Costich, D., de Leon, N., Doebley, J., Elshire, R. J., Gaut, B., Geller, L., Glaubitz, J. C., Gore, M., Guill, K. E., Holland, J., Hufford, M. B., Lai, J., Li, M., Liu, X., Lu, Y., McCombie, R., Nelson, R., Poland, J., Prasanna, B. M., Pyhäjärvi, T., Rong, T., Sekhon, R. S., Sun, Q., Tenaillon, M. I., Tian, F., Wang, J., Xu, X., Zhang, Z., Kaeppler, S. M., Ross-Ibarra, J., McMullen, M. D., Buckler, E. S., Zhang, G., Xu, Y. , Ware, D. (2012) Maize HapMap2 identifies extant variation from a genome in flux.Nat Genet, 44 803–807.
  • Corbi, J., Dutheil, J. Y., Damerval, C., Tenaillon, M. I., Manicacci, D. (2012) Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation. Ann Bot, 109 693–708.
  • Cornille, A., Gladieux, P., Smulders, M. J. M., Roldán-Ruiz, I., Laurens, F., Le Cam, B., Nersesyan, A., Clavel, J., Olonova, M., Feugey, L., Gabrielyan, I., Zhang, X.-G., Tenaillon, M. I. , Giraud, T. (2012) New insight into the history of domesticated apple: Secondary contribution of the European wild apple to the genome of cultivated varieties. PLoS Genet, 8 e1002703.
  • Dawson, J. C., Serpolay, E., Giuliano, S., Schermann, N., Galic, N., Chable, V. , Goldringer, I. (2012) Multi-trait evolution of farmer varieties of bread wheat after cultivation in contrasting organic farming systems in Europe. Genetica, 140 1–17.
  • Desjardin, C., Balliau, T., Valot, B., Zivy, M., Wimel, L., Guérin, G., Cribiu, E. , Schibler, L. (2012) A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage. Proteomics, 12 1870–1874.
  • Durand, E., Bouchet, S., Bertin, P., Ressayre, A., Jamin, P., Charcosset, A., Dillmann, C., Tenaillon, M. I. (2012) Flowering time in maize: Linkage and epistasis at a major effect locus. Genetics, 190 1547–1562.
  • Hufford, M. B., Martínez-Meyer, E., Gaut, B. S., Eguiarte, L. E. , Tenaillon, M. I. (2012) Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight. PLoS ONE, 7 e47659.
  • Islam, N. M., Jacquemot, M.-P., Coursol, S., Ng, C. K.-Y. (2012) Sphingosine in plants--more riddles from the Sphinx? New Phytol, 193 51–57.
  • Jean, N., Dumont, E., Durrieu, G., Balliau, T., Jamet, J.-L., Personnic, S. , Garnier, C. (2012) Protein expression from zooplankton communities in a metal contaminated NW mediterranean coastal ecosystem. Mar Environ Res, 80 12–26.
  • Larièpe, A., Mangin, B., Jasson, S., Combes, V., Dumas, F., Jamin, P., Lariagon, C., Jolivot, D., Madur, D., Fiévet, J., Gallais, A., Dubreuil, P., Charcosset, A., Moreau, L. (2012) The genetic basis of heterosis: Multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.). Genetics, 190 795–811.
  • Le Gouis, J., Bordes, J., Ravel, C., Heumez, E., Faure, S., Praud, S., Galic, N., Remoué, C., Balfourier, F., Allard, V. , Rousset, M. (2012) Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat. Theor Appl Genet, 124 597–611.
  • * Mangin B., Siberchicot A., Nicolas S., Doligez A., This P., Cierco-Ayrolles C. (2012) Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness. Heredity (Edinb), 108 (3) 285-91.
  • *Mboup, M., Bahri, B., Leconte, M., De Vallavieille-Pope, C., Kaltz, O. , Enjalbert, J. (2012) Genetic structure and local adaptation of European wheat yellow rust populations: The role of temperature-specific adaptation. Evol Appl, 5 341–352.
  • Nicolas S. D., Monod H., Eber F., Chevre A. M., Jenczewski E. (2012) Non-random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization. Plant J, 70 (4) 691-703.
  • Ng, C. K.-Y., Coursol, S. (2012) New insights into phospholipase d and sphingosine kinase activation in Arabidopsis. Front Physiol, 3 67.
  • Rincent, R., Laloë, D., Nicolas, S., Altmann, T., Brunel, D., Revilla, P., Rodríguez, V. M., Moreno-Gonzalez, J., Melchinger, A., Bauer, E., Schoen, C.-C., Meyer, N., Giauffret, C., Bauland, C., Jamin, P., Laborde, J., Monod, H., Flament, P., Charcosset, A. , Moreau, L. (2012) Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: Comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics, 192 715–728.
  • Sosnowski, O., Charcosset, A. , Joets, J. (2012) BioMercator V3: An upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics, 28 2082–2083.
  • Thomas, M., Demeulenaere, E., Dawson, J. C., Khan, A. R., Galic, N., Jouanne-Pin, S., Remoue, C., Bonneuil, C. , Goldringer, I. (2012) On-farm dynamic management of genetic diversity: The impact of seed diffusions and seed saving practices on a population-variety of bread wheat. Evol. Appl. 5(8): 779-795
  • Till-Bottraud, I., Gouyon, P.-H., Ressayre, A. , Godelle, B. (2012) Gametophytic vs. sporophytic control of pollen aperture number: A generational conflict. Theor Popul Biol, 82 147–157.
  • Truntzler, M., Ranc, N., Sawkins, M. C., Nicolas, S., Manicacci, D., Lespinasse, D., Ribière, V., Galaup, P., Servant, F., Muller, C., Madur, D., Betran, J., Charcosset, A. , Moreau, L. (2012) Diversity and linkage disequilibrium features in a composite public/private dent maize panel: Consequences for association genetics as evaluated from a case study using flowering time. Theor Appl Genet, 125 731–747.
  • *de Vallavieille-Pope, C., Ali, S., Leconte, M., Enjalbert, J., Delos, M. , Rouzet, J. (2012) Virulence Dynamics and Regional Structuring of Puccinia striiformis f. sp tritici in France Between 1984 and 2009. Plant Dis, 96 131–140.
  • Vincent, D., Kohler, A., Claverol, S., Solier, E., Joets, J., Gibon, J., Lebrun, M.-H., Plomion, C., Martin, F. (2012) Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor. J Proteome Res, 11 157–171.
  • Zerjal, T., Rousselet, A., Mhiri, C., Combes, V., Madur, D., Grandbastien, M.-A., Charcosset, A., Tenaillon, M. I. (2012) Maize genetic diversity and association mapping using transposable element insertion polymorphisms. Theor Appl Genet, 124(8):1521-37