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2013

Publications in refereed journals

  • Albertin W., da Silva T., Rigoulet M., Salin B., Masneuf-Pomarede I., de Vienne D., Sicard D., Bely M., Marullo P. (2013) The mitochondrial genome impacts respiration but not fermentation in interspecific Saccharomyces hybrids. PLoS One, 8 (9) e75121.
  • Albertin, W., Marullo, P., Bely, M., Aigle, M., Bourgais, A., Langella, O., Balliau, T., Chevret, D., Valot, B., da Silva, T., Dillmann, C., de Vienne, D. , Sicard, D. (2013) Linking post-translational modifications and variation of phenotypic traits. Mol Cell Proteomics, 12 720–735.
  • Ali S., Gladieux P., Rahman H., Saqib M. S., Fiaz M., Ahmad H., Leconte M., Gautier A., Justesen A. F., Hovmoller M. S., Enjalbert J., de Vallavieille-Pope C. (2013) Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici. Mol Ecol, Epub ahead of print.
  • Ali S., Gladieux P., Leconte M., Gautier A., Justesen A. F., Hovmøller M. S., Enjalbert J., de Vallavieille-Pope C. (2014) Origin, Migration Routes and Worldwide Population Genetic Structure of the Wheat Yellow Rust Pathogen Puccinia striiformis f.sp. tritici. PLoS Pathog, Epub ahead of print.
  • Bardol N., Ventelon M., Mangin B., Jasson S., Loywick V., Couton F., Derue C., Blanchard P., Charcosset A., Moreau L. (2013) Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism. Theor Appl Genet, 126 (11) 2717-36.
  • Basu-Roy S., Gauthier F., Giraut L., Mezard C., Falque M., Martin O. C. (2013) Hot Regions of Noninterfering Crossovers Coexist with a Nonuniformly Interfering Pathway in Arabidopsis thaliana. Genetics, 195 (3) 769-79.
  • Bauer E., Falque M., Walter H., Bauland C., Camisan C., Campo L., Meyer N., Ranc N., Rincent R., Schipprack W., Altmann T., Flament P., Melchinger A. E., Menz M., Moreno-Gonzalez J., Ouzunova M., Revilla P., Charcosset A., Martin O. C., Schon C. C. (2013) Intraspecific variation of recombination rate in maize. Genome Biol, 14 (9) R103.
  • Bérard C., Seifert M., Mary-Huard T., Martin-Magniette M. (2013) MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates. BMC Bioinformatics, 14 (1) 271.
  • Blein-Nicolas M., Albertin W., Valot B., Marullo P., Sicard D., Giraud C., Huet S., Bourgais A., Dillmann C., de Vienne D., Zivy M. (2013) Yeast proteome variations reveal different adaptive responses to grape must fermentation. Mol Biol Evol, 30 (6) 1368-83.
  • Boex-Fontvieille E., Davanture M., Jossier M., Zivy M., Hodges M., Tcherkez G. (2013) Protein phosphorylation in the photosynthetic control of initiation of cytoplasmic translation in Arabidopsis leaves. PLoS One, 8 (7) e70692.
  • Boex-Fontvieille E., Daventure M., Jossier M., Hodges M., Zivy M., Tcherkez G. (2013) Phosphorylation pattern of Rubisco activase in Arabidopsis leaves. Plant Biol (Stuttg), Epub ahead of print.
  • Bouchet S., Larièpe A., Servin B., Bertin P., Madur D., Combes V., Dumas F., Moreau L., Laborde J., Charcosset A., Nicolas S. D. (2013) Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus. PLoS One, 8 (8) e71377.
  • Chateil C., Goldringer I., Tarallo L., Kerbiriou C., Le Viol I., Ponge J.-F., Slamon S., Gachet S., Porcher E. (2013) Crop genetic diversity benefits farmland biodiversity in cultivated fields. Agr Ecosyst Environ, 171 25-32.
  • Citerne H. L., Le Guilloux M., Sannier J., Nadot S., Damerval C. (2013) Combining phylogenetic and syntenic analyses for understanding the evolution of TCP ECE genes in eudicots. PLoS One, 8 (9) e74803.
  • Damerval, C., Citerne, H., Le Guilloux, M., Domenichini, S., Dutheil, J., Ronse de Craene, L. , Nadot, S. (2013) Asymmetric morphogenetic cues along the transverse plane: Shift from disymmetry to zygomorphy in the flower of Fumarioideae. Am J Bot, 100 391–402.
  • Dawson, J. C., Serpolay, E., Giuliano, S., Schermann, N., Galic, N., Berthellot, J. .-F., Chesneau, V., Ferté, H., Mercier, F., Osman, A., Pino, S. , Goldringer, I. (2013) Phenotypic diversity and evolution of farmer varieties of bread wheat on organic farms in Europe.Genet. Resour. Crop Evol. 60: 145-163
  • Diez C. M., Gaut B. S., Meca E., Scheinvar E., Montes-Hernandez S., Eguiarte L. E., Tenaillon M. I. (2013) Genome size variation in wild and cultivated maize along altitudinal gradients. New Phytol, 199 (1) 264-76.
  • Douché T., Clemente H. S., Burlat V., Roujol D., Valot B., Zivy M., Pont-Lezica R., Jamet E. (2013) Brachypodium distachyon as a model plant towards improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers. Proteomics, 13 (16) 2438-54.
  • Drouaud J., Khademian H., Giraut L., Zanni V., Bellalou S., Henderson I. R., Falque M., Mezard C. (2013) Contrasted Patterns of Crossover and Non-crossover at Arabidopsis thaliana Meiotic Recombination Hotspots. PLoS Genet, 9 (11) e1003922.
  • Gonçalves B., Nougué O., Jabbour F., Ridel C., Morin H., Laufs P., Manicacci D., Damerval C. (2013) An Apetala3 homolog controls both petal identity and floral meristem patterning in Nigella damascena L. (Ranunculaceae). Plant J, 76 (2) 223-35.
  • Guerinier T., Millan L., Crozet P., Oury C., Rey F., Valot B., Mathieu C., Vidal J., Hodges M., Thomas M., Glab N. (2013) Phosphorylation of p27 homologs KRP6 and 7 by SNF1-Related protein Kinase-1 links plant energy homeostasis and cell proliferation. Plant J, 75 (3) 515-25.
  • Henry A., Moneger F., Samal A., Martin O. C. (2013) Network function shapes network structure: the case of the Arabidopsis flower organ specification genetic network. Mol Biosyst, 9 (7) 1726-35.
  • * Houel C., Martin-Magniette M.-L., Nicolas S. D., Lacombe T., Le Cunff L., Franck D., Torregrosa L., Conéjéro G., Lalet S., This P., Adam-Blondon A.-F. (2013) Genetic diversity of berry size in grapevine (Vitis vinifera L.). Aus J Grape and Wine R, 19 (2) 208-220.
  • Jolivet P., Acevedo F., Boulard C., d'Andrea S., Faure J. D., Kohli A., Nesi N., Valot B., Chardot T. (2013) Crop seed oil bodies: From challenges in protein identification to an emerging picture of the oil body proteome. Proteomics, 13 (12-13) 1836-49.
  • Khan A. R., Enjalbert J., Marsolier A.-C., Rousselet A., Goldringer I., Vitte C. (2013) Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat. BMC Plant Biol, 13 209.
  • Langella O., Valot B., Jacob D., Balliau T., Flores R., Hoogland C., Joets J., Zivy M. (2013) Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomics, 13 (9) 1457-66.
  • Mir C., Zerjal T., Combes V., Dumas F., Madur D., Bedoya C., Dreisigacker S., Franco J., Grudloyma P., Hao P. X., Hearne S., Jampatong C., Laloe D., Muthamia Z., Nguyen T., Prasanna B. M., Taba S., Xie C. X., Yunus M., Zhang S., Warburton M. L., Charcosset A. (2013) Out of America: tracing the genetic footprints of the global diffusion of maize. Theor Appl Genet, 126 (11) 2671-82.
  • Manaa A., Faurobert M., Valot B., Bouchet J.-P., Grasselly D., Causse M., Ahmed H. B. (2013) Effect of salinity and calcium on tomato fruit proteome. OMICS, 17 (6) 338-352.
  • Mir C., Zerjal T., Combes V., Dumas F., Madur D., Bedoya C., Dreisigacker S., Franco J., Grudloyma P., Hao P. X., Hearne S., Jampatong C., Laloe D., Muthamia Z., Nguyen T., Prasanna B. M., Taba S., Xie C. X., Yunus M., Zhang S., Warburton M. L., Charcosset A. (2013) Out of America: tracing the genetic footprints of the global diffusion of maize. Theor Appl Genet, 126 (11) 2671-82.
  • Muñoz Diez C., Gaut B. S., Meca E., Scheinvar E., Montes-Hernandez S., Eguiarte L. E., Tenaillon M. I. (2013) Genome size variation in wild and cultivated maize along altitudinal gradients. New Phytol, 199 264-276.
  • Pautasso, M., Aistara, G., Barnaud, A., Caillon, S., Clouvel, P., Coomes, O. T., Delêtre, M., Demeulenaere, E., De Santis, P., Döring, T., Eloy, L., Emperaire, L., Garine, E., Goldringer, I., Jarvis, D., Joly, H. I., Leclerc, C., Louafi, S., Martin, P., Massol, F., McGuire, S., McKey, D., Padoch, C., Soler, C., Thomas, M. , Tramontini, S. (2013) Seed exchange networks for agrobiodiversity conservation: A review. Agron. Sustain. Devel. 33:151-175
  • Radanielina, T., Ramanantsoanirina, A., Raboin, L.-M., Frouin, J., Perrier, X., Brabant, P. , Ahmadi, N. (2013) The original features of rice (Oryza sativa L.) genetic diversity and the importance of within-variety diversity in the highlands of Madagascar build a strong case for in situ conservation. Genet Resour Crop Ev, 60 311–323.
  • Rivière P., Goldringer I., Berthellot J. F., Galic N., Pin S., de Kochko P., Dawson J. C. (2013) Response to farmer mass selection in early generation progeny of bread wheat landrace crosses. Renewable Agric Food Syst, FirstView 1-12.
  • Samal A., Martin O. C. (2013) Shining fresh light on the evolution of photosynthesis. eLife, 2 e01403.
  • Sarilar, V., Palacios, P. M., Rousselet, A., Ridel, C., Falque, M., Eber, F., Chèvre, A.-M., Joets, J., Brabant, P. , Alix, K. (2013) Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids. New Phytol, 198 593–604.
  • Spor A., Kvitek D. J., Nidelet T., Martin J., Legrand J., Dillmann C., Bourgais A., de Vienne D., Sherlock G., Sicard D. (2013) Phenotypic and Genotypic Convergences Are Influenced by Historical Contingency and Environment in Yeast. Evolution, Epub ahead of print.
  • Suay L., Zhang D., Eber F., Jouy H., Lode M., Huteau V., Coriton O., Szadkowski E., Leflon M., Martin O. C., Falque M., Jenczewski E., Paillard S., Chevre A. M. (2013) Crossover rate between homologous chromosomes and interference are regulated by the addition of specific unpaired chromosomes in Brassica. New Phytol, Epub ahead of print.
  • Valente F., Gauthier F., Bardol N., Blanc G., Joets J., Charcosset A., Moreau L. (2013) OptiMAS: A Decision Support Tool for Marker-Assisted Assembly of Diverse Alleles. J Hered, Epub ahead of print.
  • Vitte C., Estep M., Leebens-Mack J., Bennetzen J. (2013) Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes. Ann Bot, 112 (5) 881-9.
  • Xu J. X., Pascual L., Aurand R., Bouchet J. P., Valot B., Zivy M., Causse M., Faurobert M. (2013) An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp. Proteomics, 13 (20) 3059-3063.
  • Zagorski, M., Krzywicki, A. , Martin, O. C. (2013) Edge usage, motifs, and regulatory logic for cell cycling genetic networks. Phys Rev E Stat Nonlin Soft Matter Phys, 87 012727.