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2014

Publications in refereed journals

  • Abdallah C., Valot B., Guillier C., Mounier A., Balliau T., Zivy M., van Tuinen D., Renaut J., Wipf D., Dumas-Gaudot E., Recorbet G. (2014) The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis. J Proteomics, 108 354-68.
  • Ali S., Gladieux P., Leconte M., Gautier A., Justesen A. F., Hovmoller M. S., Enjalbert J., de Vallavieille-Pope C. (2014) Origin, migration routes and worldwide population genetic structure of the wheat yellow rust pathogen Puccinia striiformis f.sp. tritici. PLoS Pathog, 10 (1) e1003903.
  • Ali S., Gladieux P., Rahman H., Saqib M. S., Fiaz M., Ahmad H., Leconte M., Gautier A., Justesen A. F., Hovmoller M. S., Enjalbert J., de Vallavieille-Pope C. (2014) Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici. Mol Ecol, 23 (3) 603-17.
  • Amiour N., Imbaud S., Clement G., Agier N., Zivy M., Valot B., Balliau T., Quillere I., Terce-Laforgue T., Dargel-Graffin C., Hirel B. (2014) An integrated "omics" approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase. BMC Genomics, 15 (1) 1005.
  • Anderson L. K., Lohmiller L. D., Tang X., Hammond D. B., Javernick L., Shearer L., Basu-Roy S., Martin O. C., Falque M. (2014) Combined fluorescent and electron microscopic imaging unveils the specific properties of two classes of meiotic crossovers. Proc Natl Acad Sci U S A, 111 (37) 13415-20.
  • Barbillon P., Thomas M., Goldringer I., Hospital F., Robin S. (2014) Network impact on persistence in a finite population dynamic diffusion model: Application to an emergent seed exchange network. J Theo Biol, 365 365–376.
  • Barve A., Hosseini S. R., Martin O. C., Wagner A. (2014) Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms. BMC Syst Biol, 8 (1) 48.
  • Boex-Fontvieille E., Davanture M., Jossier M., Zivy M., Hodges M., Tcherkez G. (2014) Photosynthetic activity influences cellulose biosynthesis and phosphorylation of proteins involved therein in Arabidopsis leaves. J Exp Bot,
  • Boex-Fontvieille E., Daventure M., Jossier M., Hodges M., Zivy M., Tcherkez G. (2014) Phosphorylation pattern of Rubisco activase in Arabidopsis leaves. Plant Biol (Stuttg), 16 (3) 550-7.
  • Bonnin, I., Bonneuil, C., Goffaux, R., Montalent, P., Goldringer, I. (2014) Explaining the decrease in the genetic diversity of wheat in France over the 20th century. Agr Ecosys Env, 195 183-192.
  • Chaze T., Guillot A., Valot B., Langella O., Chamot-Rooke J., Di Guilmi A. M., Trieu-Cuot P., Dramsi S., Mistou M. Y. (2014) O-glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry. Mol Cell Proteomics, 13 (9) 2168-82.
  • Davanture M., Dumur J., Bataille-Simoneau N., Campion C., Valot B., Zivy M., Simoneau P., Fillinger S. (2014) Phosphoproteome profiles of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea during exponential growth in axenic cultures. Proteomics, 14 (13-14) 1639-45.
  • Desjardin C., Chat S., Gilles M., Legendre R., Riviere J., Mata X., Balliau T., Esquerre D., Cribiu E. P., Betch J. M., Schibler L. (2014) Involvement of mitochondrial dysfunction and ER-stress in the physiopathology of equine osteochondritis dissecans (OCD). Exp Mol Pathol, 96 (3) 328-338.
  • Desjardin C., Riviere J., Vaiman A., Morgenthaler C., Diribarne M., Zivy M., Robert C., Le Moyec L., Wimel L., Lepage O., Jacques C., Cribiu E., Schibler L. (2014) Omics technologies provide new insights into the molecular physiopathology of equine osteochondrosis. BMC Genomics, 15 947.
  • Diez C. M., Meca E., Tenaillon M. I., Gaut B. S. (2014) Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. PLoS Genet, 10 (4) e1004298.
  • Esnault F., Solano J., Perretant M. R., Hervé M., Label A., Pellé R., Dantec J. P., Boutet G., Brabant P., Chauvin J. E. (2014) Genetic diversity analysis of a potato (Solanum tuberosum L.) collection including Chiloé Island landraces and a large panel of worldwild cultivars. Pl Genet Res Util, 12 (1) 74-82.
  • Giraud H., Lehermeier C., Bauer E., Falque M., Segura V., Bauland C., Camisan C., Campo L., Meyer N., Ranc N., Schipprack W., Flament P., Melchinger A. E., Menz M., Moreno-Gonzalez J., Ouzunova M., Charcosset A., Schon C. C., Moreau L. (2014) Linkage Disequilibrium with Linkage Analysis of Multi-Line Crosses Reveals Different Multi-Allelic QTL for Hybrid Performance in the Flint and Dent Heterotic Groups of Maize. Genetics, ahead of print, DOI 10.1534/genetics.114.169367
  • Glemin S., Clement Y., David J., Ressayre A. (2014) GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends Genet, 30 (7) 263-270.
  • Jabbour F., Cossard G., Le Guilloux M., Sannier J., Nadot S., Damerval C. (2014) Specific duplication and dorsoventrally asymmetric expression patterns of cycloidea-like genes in zygomorphic species of ranunculaceae. PLoS One, 9 (4) e95727.
  • Jahns M. T., Vezon D., Chambon A., Pereira L., Falque M., Martin O. C., Chelysheva L., Grelon M. (2014) Crossover localisation is regulated by the neddylation posttranslational regulatory pathway. PLoS Biol, 12 (8) e1001930.
  • Juste C., Kreil D. P., Beauvallet C., Guillot A., Vaca S., Carapito C., Mondot S., Sykacek P., Sokol H., Blon F., Lepercq P., Levenez F., Valot B., Carre W., Loux V., Pons N., David O., Schaeffer B., Lepage P., Martin P., Monnet V., Seksik P., Beaugerie L., Ehrlich S. D., Gibrat J. F., Van Dorsselaer A., Dore J. (2014) Bacterial protein signals are associated with Crohn's disease. Gut, ahead of prin.
  • Lehermeier C., Kramer N., Bauer E., Bauland C., Camisan C., Campo L., Flament P., Melchinger A. E., Menz M., Meyer N., Moreau L., Moreno-Gonzalez J., Ouzunova M., Pausch H., Ranc N., Schipprack W., Schonleben M., Walter H., Charcosset A., Schon C. C. (2014) Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction. Genetics, 198 (1) 3-16.
  • Leroux D., Rahmani A., Jasson S., Ventelon M., Louis F., Moreau L., Mangin B. (2014) Clusthaplo: a plug-in for MCQTL to enhance QTL detection using ancestral alleles in multi-cross design. Theor Appl Genet, 127 (4) 921-33.
  • Levy-Leduc C., Delattre M., Mary-Huard T., Robin S. (2014) Two-dimensional segmentation for analyzing Hi-C data. Bioinformatics, 30 (17) i386-i392.
  • Mirouze M., Vitte C. (2014) Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes. J Exp Bot, 65 (10) 2801-12.
  • Nougué O., Corbi J., Ball S. G., Manicacci D., Tenaillon M. I. (2014) Molecular evolution accompanying functional divergence of duplicated genes along the plant starch biosynthesis pathway. BMC Evol Biol, 14 103.
  • Renvoisé M., Bonhomme L., Davanture M., Valot B., Zivy M., Lemaire C. (2014) Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae. J Proteomics, 106C 140-150.
  • Rincent R., Moreau L., Monod H., Kuhn E., Melchinger A. E., Malvar R. A., Moreno-Gonzalez J., Nicolas S., Madur D., Combes V., Dumas F., Altmann T., Brunel D., Ouzunova M., Flament P., Dubreuil P., Charcosset A., Mary-Huard T. (2014) Recovering power in association mapping panels with variable levels of linkage disequilibrium. Genetics, 197 (1) 375-87.
  • Rivière P., Goldringer I., Berthellot J.-F., Galic N., Pin S., De Kochkoa P., Dawson J. C. (2014) Response to farmer mass selection in early generation progeny of bread wheat landrace crosses. Renew Agr Food Syst, Ahead of print.
  • Spor A., Kvitek D. J., Nidelet T., Martin J., Legrand J., Dillmann C., Bourgais A., de Vienne D., Sherlock G., Sicard D. (2014) Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast. Evolution, 68 (3) 772-90.
  • Thépot S., Restoux G., Goldringer I., Hospital F., Gouache D., Mackay I. J., Enjalbert J. (2014) Efficiently Tracking Selection in a Multiparental Population: The Case of Earliness in Wheat. Genetics, ahead of print.
  • Vindras-Fouillet C., Ranke O., Anglade J.-P., Taupier-Letage B., Chable C., Goldringer I. (2014) Sensory Analyses and Nutritional Qualities of Hand-Made Breads with Organic Grown Wheat Bread Populations. Food and Nutrition Sciences, 5 1860-1874
  • Valente F., Gauthier F., Bardol N., Blanc G., Joets J., Charcosset A., Moreau L. (2014) OptiMAS: A Decision Support Tool to Conduct Marker-Assisted Selection Programs. Methods Mol Biol, 1145 97-116.
  • Vitte C., Fustier M. A., Alix K., Tenaillon M. I. (2014) The bright side of transposons in crop evolution. Brief Funct Genomics, 13 (4) 276-95.
  • Zaag R., Tamby J. P., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou J. P., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette M. L., Brunaud V. (2014) GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res, ahead of print.