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Publication

  • Albertin W, Alix K, Balliau T, Brabant P, Davanture M, Malosse C, Valot B & Thiellement H. (2007). Differential regulation of gene products in newly synthesized Brassica napus allotetraploids is not related to gene function nor subcellular localization . BMC Genomics 8 : 56
  • Alix K., Lariagon C., Delourme R. and Manzanares-Dauleux M. (2007). Exploiting natural genetic diversity and mutant resources of Arabidopsis thaliana to study the A. thaliana - Plasmodiophora brassicae interaction. Plant Breeding 126: 218-221.
  • Camus-Kulandaivelu, L., J.B. Veyrieras, B. Gouesnard, A. Charcosset, and D. Manicacci. 2007. Evaluating the reliability of STRUCTURE outputs in case of relatedness between individuals. Crop Sci 47:885-890
  • Ciliberti S. , Martin O.C. and Wagner A. (2007) Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology, PLoS Comput Biol 3(2): e15.
  • CilibertiS. , Martin O.C. and Wagner A. (2007) Innovation and robustness in complex regulatory gene networks, PNAS 104(34):13591-6.
  • Damerval C, Le Guilloux M, Jager M, Charon C. (2007). Diversity and evolution of CYCLOIDEA-Like TCP genes in relation to flower development in Papaveraceae. Plant Physiol. 143: 759-72.
  • Damerval C et Nadot S. (2007). Evolution of perianth and stamen characteristics with respect to floral symmetry in Ranunculales. /Ann. Bot./doi: 10.1093/aob/mcm041
  • Drouaud, J., Mercier, R, Chelysheva, L., Bérard, A., Falque, M., Martin, O., Zanni, V., Brunel, D., and C. Mézard. (2007). Sex-specific crossover distribution and variations in interference level along Arabidopsis thaliana chromosome 4. PLoS Genet 3(6): e106
  • Falque, M., Mercier, R., Mézard, C., de Vienne, D., and O.C. Martin. (2007). Patterns of recombination rate along chromosomes : importance of interference and obligate chiasma, Genetics 176: 1453-1467.
  • Gallais A., Moreau L., Charcosset A. (2007) Detection of marker-QTL associations by studying change in marker frequencies with selective genotyping. Theor Appl Genet, 114 (4): 669-681
  • Manicacci, D., Falque, M., Le Guillou, S., Piégu, B., Henry, A.M., Le Guillou, M., Damerval, C. & D. de Vienne (2007). Maize Sh2 gene is constrained by natural selection but escaped domestication. Journal of Evolutionary Biology 20 (2), 503–516.
  • Méchin V., Thévenot C., Le Guilloux M., Prioul J.L. and Damerval C. 2007. Developmental analysis of maize endosperm proteome suggests a pivotal role for PPDK in starch/protein balance. Plant Physiol. 143: 1203-1219.
  • Moeller A., Tenaillon M.I. and Tiffin P. 2007. Population structure and its effects on patterns of nucleotide polymorphism in teosinte (Zea mays ssp. parviglumis). Genetics 176: 1799-1809.
  • Rhoné B., Raquin AL., Goldringer I. (2007) Strong linkage disequilibrium near the selected Yr17 resistance gene in a wheat population under dynamic management. Theor. Appl. Genet. 114:787–802
  • Sicard, D., Pennings, P.S., Grandclément, C., Acosta, J., Kaltz, O. and Shykoff, J. A. (2007). Specialization and local adaptation of a fungal parasite on two host species as revealed by two fitness traits. Evolution 61, 27-41.
  • Siol M., Bonnin I., Olivieri I., Prosperi J.M. and Ronfort J. (2007). Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the selfing annual Medicago truncatula. Journal of Evolutionary Biology 20: 2349-2360.
  • Sumedha, Martin O.C. and Wagner A. (2007), New structural variation in evolutionary searches of RNA neutral networks,BioSystems 90: 475-485.
  • Sumedha, Martin O.C. and Peliti L. (2007) Population size effects in evolutionary dynamics on neutral networks and toy landscapes, J. Stat. Mech. P05011.
  • Thuillet A-C., Tenaillon M.I., Anderson L.K., Mitchell S.E., Kresovich S., Stack S.M., Gaut B.S. and Doebley J (2007). A weak effect of background selection on trinucleotide microsatellites in maize. Journal of Heredity. 99(1): 45-55
  • Veyrieras, J.B., Goffinet B., and Charcosset A. (2007) MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments. BMC Bioinformatics 8(1):49.
 
  • Alix, K., Joets, J., Ryder, C. D., Moore, J., Barker, G. C., Bailey, J. P., King, G. J.,Heslop-Harrison, J. P. S. (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant J, 56 1030–1044.
  • Blanc,G. Charcosset,A. Veyrieras,J B. Gallais,A. Moreau,L. 2008. Marker-assisted selection efficiency in multiple connected populations: a simulation study based on the results of a QTL detection experiment in maize Euphytica 161 : 71-84.
  • Bonnin,I. Rousset,M. Madur,D. Sourdille,P. Dupuits,C. Brunel,D. Goldringer,I. 2008. FT genome A and D polymorphisms are associated with the variation of earliness components in hexaploid wheat. Theor Appl Genet 116 : 383-394.
  • Camus-Kulandaivelu,L. Chevin,L M. Tollon-Cordet,C. Charcosset,A. Manicacci,D. Tenaillon,M I. 2008. Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics 180 : 1107-1121.
  • Coque M., Gallais A. (2008) Genetic variation for N-remobilization and postsilking N-up-take in a set of maize recombinant inbred lines. 2. Line per se performance and comparison with testcross performance. Maydica, 53 (1) 29-38.
  • Coque,M. Martin,A. Veyrieras,J B. Hirel,B. Gallais,A. 2008. Genetic variation for N-remobilization and postsilking N-uptake in a set of maize recombinant inbred lines. 3. QTL detection and coincidences. Theor Appl Genet 117(5) : 729-747.
  • Ducrocq,S. Madur,D. Veyrieras,J B. Camus-Kulandaivelu,L. Kloiber-Maitz,M. Presterl,T. Ouzunova,M. Manicacci,D. Charcosset,A. 2008. Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics 178 : 2433-2437.
  • *Ducruix, C., Vailhen, D., Werner, E., Fiévet, J. B., Bourguignon, J., Tabet, J.-C., Ezan, E.,Junot, C. (2008) Metabolomic investigation of the response of the model plant Arabidopsis thaliana to cadmium exposure: Evaluation of data pretreatment methods for further statistical analyses. Chemometr Intell Lab Syst, 91 67–77.
  • Gallais,A. Carle,J. Simplot-Ryl,D. Stojmenovic,I. 2008. Localized sensor area coverage with low communication overhead Ieee Transactions On Mobile Computing 7 : 661-672.
  • Gallais A., Coque M., Bertin P. (2008) Response to selection of a maize population for adaptation to high or low nitrogen fertilization. Maydica, 53 (1) 21-28.
  • Garcia-Verdugo,I. Synguelakis, M. Degrouard,J. Franco,C A. Valot,B. Zivy,M. Chaby,R. Tanfin,Z. 2008. Interaction of surfactant protein A with the intermediate filaments desmin and vimentin. Biochemistry 47 : 5127-5138.
  • Jabbour,F. Damerval,C. Nadot,S. 2008. Evolutionary Trends in the Flowers of Asteridae: Is Polyandry an Alternative to Zygomorphy? Ann Bot (Lond) 102(2) : 153-165.
  • Jorg,T. Martin,O. Wagner,A. 2008. Neutral network sizes of biological RNA molecules can be computed and are not atypically small. BMC Bioinformatics 9 : 464.
  • Kuang,H H. van Eck,H J. Sicard,D. Michelmore,R. Nevo,E. 2008. Evolution and genetic population structure of prickly lettuce (Lactuca serriola) and its RGC2 resistance gene cluster Genetics 178 : 1547-1558.
  • Langella, O.,Zivy, M. (2008) A method based on bead flows for spot detection on 2-D gel images. Proteomics, 8 4914–4918.
  • Martin,O C. Wagner,A. 2008. Multifunctionality and robustness trade-offs in model genetic circuits Biophysical Journal 94 : 2927-2937.
  • Martinez A., Traverso J. A., Valot B., Ferro M., Espagne C., Ephritikhine G., Zivy M., Giglione C., Meinnel T. (2008) Extent of N-terminal modifications in cytosolic proteins from eukaryotes. Proteomics, 8 (14) 2809-31.
  • Nadot S., Furness C. A., Sannier J., Penet L., Triki-Teurtroy S., Albert B., Ressayre A. (2008) Phylogenetic comparative analysis of microsporogenesis in angiosperms with a focus on monocots. Am J Bot, 95 (11) 1426-36.
  • Prioul J. L., Mechin V., Damerval C. (2008) Molecular and biochemical mechanisms in maize endosperm development: the role of pyruvate-Pi-dikinase and Opaque-2 in the control of C/N ratio. C R Biol, 331 (10) 772-9.
  • Prioul J. L., Mechin V., Lessard P., Thevenot C., Grimmer M., Chateau-Joubert S., Coates S., Hartings H., Kloiber-Maitz M., Murigneux A., Sarda X., Damerval C., Edwards K. J. (2008) A joint transcriptomic, proteomic and metabolic analysis of maize endosperm development and starch filling. Plant Biotechnol J, 6 (9) 855-69.
  • Pouilly, N., Delourme, R., Alix, K.,Jenczewski, E. (2008) Repetitive sequence-derived markers tag centromeres and telomeres and provide insights into chromosome evolution in Brassica napus. Chromosome Res, 16 683–700.
  • Raquin,A L. Brabant,P. Rhone,B. Balfourier,F. Leroy,P. Goldringer,I. 2008. Soft selective sweep near a gene that increases plant height in wheat Molecular Ecology 17 : 741-756.
  • Raquin A. L., Brabant P., Rhone B., Balfourier F., Leroy P., Goldringer I. (2008) Soft selective sweep near a gene that increases plant height in wheat. Mol Ecol, 17 (3) 741-56.
  • Raquin, A.-L., Depaulis, F., Lambert, A., Galic, N., Brabant, P.,Goldringer, I. (2008) Experimental estimation of mutation rates in a wheat population with a gene genealogy approach. Genetics, 179 2195–2211.
  • Rhone,B. Remoué,C. Galic,N. Goldringer,I. Bonnin,I. 2008. Insight into the genetic bases of climatic adaptation in experimentally evolving wheat populations. Mol Ecol 17 : 930-943.
  • Siol,M. Prosperi,J M. Bonnin,I. Ronfort,J. 2008. How multilocus genotypic pattern helps to understand the history of selfing populations: a case study in Medicago truncatula. Heredity 100 : 517-525.
  • Spor,A. Wang,S. Dillmann,C. de Vienne,D. Sicard,D. 2008. "Ant" and "grasshopper" life-history strategies in Saccharomyces cerevisiae. PLoS ONE 3 : e1579.
  • Tenaillon,M I. Austerlitz,F. Tenaillon,O. 2008. Apparent mutational hotspots and long distance linkage disequilibrium resulting from a bottleneck Journal Of Evolutionary Biology 21 : 541-550.
  • Tenaillon,M I. Tiffin,P L. 2008. The quest for adaptive evolution: a theoretical challenge in a maze of data Current Opinion In Plant Biology 11 : 110-115.
  • Thuillet,A C. Tenaillon,M I. Falque,M. Mitchell,S E. Kresovich,S. Stack,S M. Gaut,B. Doebley,J. 2008. A weak effect of background selection on trinucleotide microsatellites in maize Journal Of Heredity 99 : 45-55.
  • van Bueren E. T. L., Ostergard H., Goldringer I., Scholten O. (2008) Plant breeding for organic and sustainable, low-input agriculture: dealing with genotype-environment interactions. Euphytica, 163 (3) 321-322.
  • Wolfe, M. S., Baresel, J. P., Desclaux, D., Goldringer, I., Hoad, S., Kovacs, G., Loeschenberger, F., Miedaner, T., Ostergard, H.,van Bueren, L. E. T. (2008) Developments in breeding cereals for organic agriculture. Euphytica, 163 323–346.
  • Xiong,T C. Coursol,S. Grat,S. Ranjeva,R. Mazars,C. 2008. Sphingolipid metabolites selectively elicit increases in nuclear calcium concentration in cell suspension cultures and in isolated nuclei of tobacco. Cell Calcium 43 : 29-37.
   
  • Albert, B., Gouyon, P.-H., Ressayre, A. (2009) Microsporogenesis variation in Codiaeum producing inaperturate pollen grain. C R Biol, 332 507–516.
  • Albertin, W., Langella, O., Joets, J., Négroni, L., Zivy, M., Damerval, C., Thiellement, H. (2009) Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus. Proteomics, 9 793–799.
  • Albertin, W., Marullo, P., Aigle, M., Bourgais, A., Bely, M., Dillmann, C., de Vienne, D., Sicard, D. (2009) Evidence for autotetraploidy associated with reproductive isolation in Saccharomyces cerevisiae: Towards a new domesticated species. J Evol Biol, 22 2157-2170.
  • Aloui, A., Recorbet, G., Gollotte, A., Robert, F., Valot, B., Gianinazzi-Pearson, V., Aschi-Smiti, S., Dumas-Gaudot, E. (2009) On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study. Proteomics, 9 420–433.
  • Barre, P., Moreau, L., Mi, F., Turner, L., Gastal, F., Julier, B.,Ghesquiere, M. (2009) Quantitative trait loci for leaf length in perennial ryegrass (Lolium perenne L.). Grass and Forage Science, 64 310–321.
  • Bérard A., Le Paslier M. C., Dardevet M., Exbrayat-Vinson F., Bonnin I., Cenci A., Haudry A., Brunel D., Ravel C. (2009) High-throughput single nucleotide polymorphism genotyping in wheat (Triticum spp.). Plant Biotechnol J, 7 (4) 364-74.
  • * David P., Chen N. W., Pedrosa-Harand A., Thareau V., Sevignac M., Cannon S. B., Debouck D., Langin T., Geffroy V. (2009) A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiol, 151 (3) 1048-65.
  • Ducrocq, S., Giauffret, C., Madur, D., Combes, V., Dumas, F., Jouanne, S., Coubriche, D., Jamin, P., Moreau, L.,Charcosset, A. (2009) Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10. Genetics, 183 1555–1563.
  • Edelist, C., Raffoux, X., Falque, M., Dillmann, C., Sicard, D., Rieseberg, L. H., Karrenberg, S. (2009) Differential expression of candidate salt-tolerance genes in the halophyte Helianthus paradoxus and its glycophyte progenitors H. annuus and H. petiolaris (Asteraceae). Am. J. Bot. 96 1830–1838.
  • Falque, M., Anderson, L. K., Stack, S. M., Gauthier, F.,Martin, O. C. (2009) Two Types of Meiotic Crossovers Coexist in Maize. Plant Cell, 21(12) 3915–3925.
  • Frottin F., Espagne C., Traverso J. A., Mauve C., Valot B., Lelarge-Trouverie C., Zivy M., Noctor G., Meinnel T., Giglione C. (2009) Cotranslational proteolysis dominates glutathione homeostasis to support proper growth and development. Plant Cell, 21 (10) 3296-314.
  • Gallais, A. (2009) Full-Sib Reciprocal Recurrent Selection with the Use of Doubled Haploids. Crop Science, 49 150–152.
  • Jabbour, F., Nadot, S., Damerval, C. (2009) Evolution of floral symmetry: A state of the art. C R Biol, 332 219–231.
  • Jabbour F., Ronse De Craene L. P., Nadot S., Damerval C. (2009) Establishment of zygomorphy on an ontogenic spiral and evolution of perianth in the tribe Delphinieae (Ranunculaceae). Ann Bot, 104 (5) 809-22.
  • Jannink, J.-L., Moreau, L., Charmet, G.,Charcosset, A. (2009) Overview of QTL detection in plants and tests for synergistic epistatic interactions. Genetica, 136 225–236.
  • Johannes, F., Porcher, E., Teixeira, F. K., Saliba-Colombani, V., Simon, M., Agier, N., Bulski, A., Albuisson, J., Heredia, F., Audigier, P., Bouchez, D., Dillmann, C., Guerche, P., Hospital, F., Colot, V. (2009) Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet, 5 e1000530.
  • Legrand, D., Tenaillon, M. I., Matyot, P., Gerlach, J., Lachaise, D.,Cariou, M.-L. (2009) Species-wide Genetic Variation and Demographic History of Drosophila sechellia, a Species Lacking Population Structure. Genetics, 182 1197–1206.
  • Manicacci, D., Camus-Kulandaivelu, L., Fourmann, M., Arar, C., Barrault, S., Rousselet, A., Feminias, N., Consoli, L., Francès, L., Méchin, V., Murigneux, A., Prioul, J.-L., Charcosset, A., Damerval, C. (2009) Epistatic Interactions between Opaque2 Transcriptional Activator and Its Target Gene CyPPDK1 Control Kernel Trait Variation in Maize. Plant Physiol, 150 506–520.
  • Martin, O. C.,Wagner, A. (2009) Effects of recombination on complex regulatory circuits. Genetics, 183 673–84, 1SI-8S.
  • Marullo, P., Mansour, C., Dufour, M., Albertin, W., Sicard, D., Bely, M., Dubourdieu, D. (2009) Genetic improvement of thermo-tolerance in wine Saccharomyces cerevisiae strains by a backcross approach. FEMS Yeast Res 9, 1148-1160.
  • * Nicolas S. D., Leflon M., Monod H., Eber F., Coriton O., Huteau V., Chevre A. M., Jenczewski E. (2009) Genetic regulation of meiotic cross-overs between related genomes in Brassica napus haploids and hybrids. Plant Cell, 21 (2) 373-85.
  • Ostergard, H., Finckh, M. R., Fontaine, L., Goldringer, I., Hoad, S. P., Kristensen, K., van Bueren, E. L. T., Mascher, F., Munk, L.,Wolfe, M. S. (2009) Time for a shift in crop production: Embracing complexity through diversity at all levels. J Sci Food Agr, 89 1439–1445.
  • Parisod C., Salmon A., Zerjal T., Tenaillon M., Grandbastien M. A., Ainouche M. (2009) Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina. New Phytol, 184 (4) 1003-15.
  • Roulin A., Piegu B., Fortune P. M., Sabot F., D'Hont A., Manicacci D., Panaud O. (2009) Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae. BMC Evol Biol, 9 58.
  • Ross-Ibarra, J., Tenaillon, M., Gaut, B. S. (2009) Historical divergence and gene flow in the genus Zea. Genetics, 181 1399–1413.
  • Saintenac, C., Falque, M., Martin, O. C., Paux, E., Feuillet, C., Sourdille, P. (2009) Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics, 181 393–403.
  • Sirichandra, C., Gu, D., Hu, H.-C., Davanture, M., Lee, S., Djaoui, M., Valot, B., Zivy, M., Leung, J., Merlot, S., Kwak, J. M. (2009) Phosphorylation of the Arabidopsis AtrbohF NADPH oxidase by OST1 protein kinase. FEBS Lett, 583 2982–2986.
  • Spor, A., Nidelet, T., Simon, J., Bourgais, A., de Vienne, D.,Sicard, D. (2009) Niche-driven evolution of metabolic and life-history strategies in natural and domesticated populations of Saccharomyces cerevisiae. BMC Evol Biol, 9 296.
  • Vincent, D., Balesdent, M.-H., Gibon, J., Claverol, S., Lapaillerie, D., Lomenech, A.-M., Blaise, F., Rouxel, T., Martin, F., Bonneu, M., Amselem, J., Dominguez, V., Howlett, B. J., Wincker, P., Joets, J., Lebrun, M.-H.,Plomion, C. (2009) Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE. Electrophoresis, 30 4118–4136.
  • Zerjal, T., Joets, J., Alix, K., Grandbastien, M.-A.,Tenaillon, M. I. (2009) Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome. Plant Mol Biol, 71 99–114.
   

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