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Publications

Publications of the RAMDAM team members since 2008

October 2019

2019

Tourrette E, Bernardo R, Falque M, Martin OC (2019) Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa. G3, Epub ahead of print. https://doi.org/10.1534/g3.119.400545

Courret C, Gérard PR, Ogereau D, Falque M, Moreau L, Montchamp-Moreau C (2019) X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression. Heredity, 122 (6) 906–915. https://doi.org/10.1038/s41437-018-0163-1

Kreplak J, ..., Falque M, ..., Wincker P, Burstin J (2019) A reference genome for pea provides insight into legume genome evolution. Nat Genet, 51 (9) 1411–1422. https://doi.org/10.1038/s41588-019-0480-1

Virlouvet L, El Hage F, Griveau Y, Jacquemot M-P, Gineau E, Baldy A, Legay S, Horlow C, Combes V, Bauland C, Palafre C, Falque M, Moreau L, Coursol S, Méchin V, Reymond M (2019) Water Deficit-Responsive QTLs for Cell Wall Degradability and Composition in Maize at Silage Stage. Front Plant Sci, 10 488. https://doi.org/10.3389/fpls.2019.00488

Termolino P, Falque M, Aiese Cigliano R, Cremona G, Paparo R, Ederveen A, Martin OC, Consiglio FM, Conicella C (2019) Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis. Plant J, tpj.14505. https://doi.org/10.1111/tpj.14505

2018

Grigolon S., Bravi B., Martin O. C. (2018) Response to auxin signals: an operating principles for dynamical sensitivity yet high resilience. R Soc open sci, 5 (1) 172098.

Raffoux X., Bourge M., Dumas F., Martin O. C., Falque M. (2018) High throughput measurement of recombination rates and genetic interference in S. cerevisiae. Yeast, 35 (6) 431-442.

Raffoux X., Bourge M., Dumas F., Martin O. C. and Falque M. (2018) Role of cis, trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae. Genetics, 35 (6) 431-442.

2017

Giraud H., Bauland C., Falque M., Madur D., Combes V., Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A., Moreau L. (2017) Reciprocal Genetics: Identifying QTLs for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups. Genetics, 207 (3) 1167-1180.

Giraud H., Bauland C., Falque M., Madur D., Combes V., Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A., Moreau L. (2017) Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.). G3 (Bethesda), 7 (11) 3649-3657.

Pelé A., Falque M., Trotoux G., Eber F., Negre S., Gilet M., Huteau V., Lode M., Jousseaume T., Dechaumet S., Morice J., Poncet C., Coriton O., Martin O. C., Rousseau-Gueutin M., Chevre A. M. (2017) Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas. PLoS Genet, 13 (5) e1006794.

Samal A., Martin O. C. (2017) Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes. J Genet, 96 (5) 795-800.

2016

Boutet G., Alves Carvalho S., Falque M., Peterlongo P., Lhuillier E., Bouchez O., Lavaud C., Pilet-Nayel M. L., Riviere N., Baranger A. (2016) SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. BMC Genomics, 17 (1) 121.

Hosseini, S. R., Martin, O. C., Wagner, A. (2016) Phenotypic innovation through recombination in genome-scale metabolic networks. Proc Biol Sci, 283, 1839.

Henry A., Martin O. C. (2016) Short relaxation times but long transient times in both simple and complex reaction networks. J R Soc Interface, 13 (120)

Martin O. C., Krzywicki A., Zagorski M. (2016) Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function. Phys Life Rev, 17 124-58.

Mori M., Hwa T., Martin O. C., De Martino A., Marinari E. (2016) Constrained Allocation Flux Balance Analysis. PLoS Comput Biol, 12 (6) e1004913.

2015

Sidhu G. K., Fang C., Olson M. A., Falque M., Martin O. C., Pawlowski W. P. (2015) Recombination patterns in maize reveal limits to crossover homeostasis. Proc Natl Acad Sci U S A, 112 (52) 15982-7.

Tayeh N., Aluome C., Falque M., Jacquin F., Klein A., Chauveau A., Berard A., Houtin H., Rond C., Kreplak J., Boucherot K., Martin C., Baranger A., Pilet-Nayel M. L., Warkentin T. D., Brunel D., Marget P., Le Paslier M. C., Aubert G., Burstin J. (2015) Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high density, high resolution consensus genetic map. Plant J, 84 (6) 1257-73.

2014

Anderson L. K., Lohmiller L. D., Tang X., Hammond D. B., Javernick L., Shearer L., Basu-Roy S., Martin O. C., Falque M. (2014) Combined fluorescent and electron microscopic imaging unveils the specific properties of two classes of meiotic crossovers. Proc Natl Acad Sci U S A, 111 (37) 13415-20.

Giraud H., Lehermeier C., Bauer E., Falque M., Segura V., Bauland C., Camisan C., Campo L., Meyer N., Ranc N., Schipprack W., Flament P., Melchinger A. E., Menz M., Moreno-Gonzalez J., Ouzunova M., Charcosset A., Schon C. C., Moreau L. (2014) Linkage Disequilibrium with Linkage Analysis of Multi-Line Crosses Reveals Different Multi-Allelic QTL for Hybrid Performance in the Flint and Dent Heterotic Groups of Maize. Genetics, 198 (4) 1717-34.

Jahns M. T., Vezon D., Chambon A., Pereira L., Falque M., Martin O. C., Chelysheva L., Grelon M. (2014) Crossover localisation is regulated by the neddylation posttranslational regulatory pathway. PLoS Biol, 12 (8) e1001930.

Suay L., Zhang D. S., Eber F., Jouy H., Lode M., Huteau V., Coriton O., Szadkowski E., Leflon M., Martin O. C., Falque M., Jenczewski E., Paillard S., Chevre A. M. (2014) Crossover rate between homologous chromosomes and interference are regulated by the addition of specific unpaired chromosomes in Brassica. New Phytol, 201 (2) 645-656.

2013

Basu-Roy S., Gauthier F., Giraut L., Mezard C., Falque M., Martin O. C. (2013) Hot Regions of Noninterfering Crossovers Coexist with a Nonuniformly Interfering Pathway in Arabidopsis thaliana. Genetics, 195 (3) 769-79.

Bauer E., Falque M., Walter H., Bauland C., Camisan C., Campo L., Meyer N., Ranc N., Rincent R., Schipprack W., Altmann T., Flament P., Melchinger A. E., Menz M., Moreno-Gonzalez J., Ouzunova M., Revilla P., Charcosset A., Martin O. C., Schon C. C. (2013) Intraspecific variation of recombination rate in maize. Genome Biol, 14 (9) R103.

Drouaud J., Khademian H., Giraut L., Zanni V., Bellalou S., Henderson I. R., Falque M., Mezard C. (2013) Contrasted Patterns of Crossover and Non-crossover at Arabidopsis thaliana Meiotic Recombination Hotspots. PLoS Genet, 9 (11) e1003922.

2011

Ganal M. W., Durstewitz G., Polley A., Berard A., Buckler E. S., Charcosset A., Clarke J. D., Graner E. M., Hansen M., Joets J., Le Paslier M. C., McMullen M. D., Montalent P., Rose M., Schon C. C., Sun Q., Walter H., Martin O. C., Falque M. (2011) A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One, 6 (12) e28334.

Gauthier F., Martin O. C., Falque M. (2011) CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes. BMC Bioinformatics, 12 27.

Giraut L., Falque M., Drouaud J., Pereira L., Martin O. C., Mezard C. (2011) Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes. PLoS Genet, 7 (11) e1002354.

Martin O. C., Hospital F. (2011) Distribution of parental genome blocks in recombinant inbred lines. Genetics, 189 (2) 645-54.

2010

Cassan L., Moreau L., Segouin S., Bellamy A., Falque M., Limami A. M. (2010) Genetic map construction and quantitative trait loci (QTL) mapping for nitrogen use efficiency and its relationship with productivity and quality of the biennial crop Belgian endive (Cichorium intybus L.). J Plant Physiol, 167 (15) 1253-63.

Bourguignon P. Y., Samal A., Kepes F., Jost J., Martin O. C. (2010) Challenges in experimental data integration within genome-scale metabolic models. Algorithms Mol Biol, 5 20.

Junier I., Martin O. C., Kepes F. (2010) Spatial and topological organization of DNA chains induced by gene co-localization. PLoS Comput Biol, 6 (2) e1000678.

2009

Falque M., Anderson L. K., Stack S. M., Gauthier F., Martin O. C. (2009) Two types of meiotic crossovers coexist in maize. Plant Cell, 21 (12) 3915-25.
Raw RN position data available here - Données brutes de position des RN disponibles ici

Saintenac C., Falque M., Martin O. C., Paux E., Feuillet C., Sourdille P. (2009) Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics, 181 (2) 393-403.