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Publications DEAP depuis 2008



Lecarpentier C., Barillot R., Blanc E., Abichou M., Goldringer I., Barbillon P., Enjalbert J. and Andrieu B. (2019) WALTer: a three-dimensional wheat model to study competition for light through the prediction of tillering dynamics. Ann Bot, 123 (6), 961–975.


Borg J., Kiær L. P., Lecarpentier C., Goldringer I., Gauffreteau A., Saint-Jean S., Barot S., Enjalbert A. (2018) Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps. Field Crops Res, 221 298-313.

Lamichhane J. R., Arseniuk E., Boonekamp P., Czembor J., Decroocq V., Enjalbert J., Finckh M. R., Korbin M., Koppel M., Kudsk P., Mesterhazy A., Sosnowska D., Zimnoch-Guzowska E., Messean A. (2017) Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective. Pest Manag Sci, 74 (6) 1219-1227.

Perronne R., Goldringer I. (2018) Application of a partitioning procedure based on Rao quadratic entropy index to characterize the temporal evolution of in situ varietal and genetic diversity of bread wheat in France over the period 1981-2006. Theor Appl Genet, 131 (4) 775-786.


Ali S., Sharma A., Leconte M., Shah D. A., Duveiller E., Enjalbert A., De Vallavieille C. (2017) Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal). Plant Pathol, 67 (4) 810-820.

Barot S., Allard V., Cantarel A., Enjalbert Q., Gauffreteau A., Goldringer I., Lata J.-C., Le Roux X., Niboyet A., Porcher E. (2017) Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agro Sustain Dev, 37:13.

Demeulenaere E., Rivière P., Hyacinthe A., Baltassat R., Baltazar S., Gascuel J.-S., Lacanette J., Montaz H., Pin S., Ranke O., Serpolay-Besson E., Thomas M., Van Frank G., Vanoverschelde M., Vindras-Fouillet C., Goldringer I. (2017) La sélection participative à l’épreuve du changement d’échelle. À propos d’une collaboration entre paysans sélectionneurs et généticiens de terrain. Nat Sci Soc, 25 (4) 336-346.

Demeulenaere E., Goldringer I. (2017) Semences et transcription agroécologique : initiatives paysannes et sélection participative comme innovations de rupture. Nat Sci Soc, 25 (S55-S59).

Lamichhane J. R., Arseniuk E., Boonekamp P., Czembor J., Decroocq V., Enjalbert J., Finckh M. R., Korbin M., Koppel M., Kudsk P., Mesterhazy A., Sosnowska D., Zimnoch-Guzowska E., Messean A. (2017) Advocating a need for suitable breeding approaches to boost Integrated Pest Management: A European perspective. Pest Manag Sci,74 (6) 1219-1227.

Perronne R., Makowksi D., Goffaux R., Montalent P., Goldringer I. (2017) Temporal evolution of varietal, spatial and genetic diversity of bread wheat between 1980 and 2006 strongly depends upon agricultural regions in France. Agriculture, Ecosystems & Environment, 236 12-20.

Perronne R., Diguet S., de Vallavieille-Pope C., Leconte M., Enjalbert J. (2017) A framework to characterize the commercial life cycle of crop varieties: Application to the case study of the influence of yellow rust epidemics on French bread wheat varieties. Field Crops Res, 209 159-167.


Ali S., Soubeyrand S., Gladieux P., Giraud T., Leconte M., Gautier A., Mboup M., Chen W., de Vallavieille-Pope C., Enjalbert J. (2016) CloNcaSe: Estimation of sex frequency and effective population size by clonemate re-sampling in partially clonal organisms. Mol Ecol Resour,  16 (4) 845-61.

Durand J. L., Andrieu B., Barillot R., Barre P., Combes D., Enjalbert J., Escobar-Gutierrez A., Faverjon L., Lecarpentier C., Litrico I., Louarn G., Migault V., Sanchez L. (2016) Designing and improving mixed grasslands: advances made in modelling forage variety performance. Fourrages, (225) 21-28.

Hazard L., Gauffreteau A., Borg J., Charron M. H., Deo M., Enjalbert J., Goutiers V., Gressier E. (2016) Using innovative approaches to meet the challenges of a rapidly changing climate and world: the utility of co-design in plant breeding programmes. Fourrages, (225) 39-47.

Labeyrie V., Thomas M., Muthamia Z. K., Leclerc C. (2016) Seed exchange networks, ethnicity, and sorghum diversity. Proc Natl Acad Sci U S A, 113 (1) 98-103.

Thomas M., Caillon S. (2016) Effects of farmer social status and plant biocultural value on seed circulation networks in Vanuatu. Ecol Soc, 21 (2) 13.

Violon C., Thomas M., Garine E. (2016) Good year, bad year: changing strategies, changing networks? A two-year study on seed acquisition in northern Cameroon. Ecol Soc, 21 (2) 34.

Walter S., Ali S., Kemen E., Nazari K., Bahri B. A., Enjalbert J., Hansen J. G., Brown J. K., Sicheritz-Ponten T., Jones J., de Vallavieille-Pope C., Hovmoller M. S., Justesen A. F. (2016) Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. Ecol Evol, 6 (9) 2790-804.

Wencélius J., Thomas M., Barbillon P., Garine E. (2016) Interhousehold variability and its effects on seed circulation networks: a case study from northern Cameroon. Ecol Soc, 21 (1) 44.


Barbillon P., Thomas M., Goldringer I., Hospital F., Robin S. (2015) Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network. J Theor Biol, 365 365-76.

Gaba S., Lescourret F., Boudsocq S., Enjalbert J., Hinsinger P., Journet E. P., Navas M. L., Wery J., Louarn G., Malezieux E., Pelzer E., Prudent M., Ozier-Lafontaine H. (2015) Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design. Agron sustain dev, 35 (2) 607-623.

Riviere P., Goldringer I., Berthellot J. F., Galic N., Pin S., De Kochko P., Dawson J. C. (2015) Response to farmer mass selection in early generation progeny of bread wheat landrace crosses. Renew Agr Food Syst, 30 (2) 190-201.

Riviere P., Dawson J. C., Goldringer I., David O. (2015) Hierarchical Bayesian Modeling for Flexible Experiments in Decentralized Participatory Plant Breeding. Crop Science, 55 (3) 1053-1067.

Thepot S., Restoux G., Goldringer I., Hospital F., Gouache D., Mackay I., Enjalbert J. (2015) Efficiently tracking selection in a multiparental population: the case of earliness in wheat. Genetics, 199 (2) 609-23.

Thomas M., Thepot S., Galic N., Jouanne-Pin S., Remoue C., Goldringer I. (2015) Diversifying mechanisms in the on-farm evolution of crop mixtures. Mol Ecol, 24 (12) 2937-54.


Ali S., Gladieux P., Leconte M., Gautier A., Justesen A. F., Hovmoller M. S., Enjalbert J., de Vallavieille-Pope C. (2014) Origin, migration routes and worldwide population genetic structure of the wheat yellow rust pathogen Puccinia striiformis f.sp. tritici. PLoS Pathog, 10 (1) e1003903.

Ali S., Gladieux P., Rahman H., Saqib M. S., Fiaz M., Ahmad H., Leconte M., Gautier A., Justesen A. F., Hovmoller M. S., Enjalbert J., de Vallavieille-Pope C. (2013) Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici. Mol Ecol, 23 (3) 603-17.

Ali S., Leconte M., Rahman H., Saqib M. S., Gladieux P., Enjalbert J., de Vallavieille-Pope C. (2014) A high virulence and pathotype diversity of Puccinia striiformis f.sp tritici at its centre of diversity, the Himalayan region of Pakistan. Eur J Plant Pathol, 140 (2) 275-290.

Barbillon P., Thomas M., Goldringer I., Hospital F., Robin S. (2014) Network impact on persistence in a finite population dynamic diffusion model: Application to an emergent seed exchange network. J Theor Biol, 365 365–376.

Bonnin, I., Bonneuil, C., Goffaux, R., Montalent, P., Goldringer, I. (2014) Explaining the decrease in the genetic diversity of wheat in France over the 20th century. Agr Ecosys Env, 195 183-192.

Vindras-Fouillet C., Ranke O., Anglade J.-P., Taupier-Letage B., Chable C., Goldringer I. (2014) Sensory Analyses and Nutritional Qualities of Hand-Made Breads with Organic Grown Wheat Bread Populations. Food and Nutrition Sciences, 5 1860-1874.


Chateil, C., Goldringer, I., Tarallo, L., Kerbiriou, C., Le Viol, I., Ponge, J.-F., Slamon, S., Gachet, S. and Porcher, E. (2013) Crop genetic diversity benefits farmland biodiversity in cultivated fields. Agr Ecosyst Environ, 171 25-32.

Dawson, J. C., Serpolay, E., Giuliano, S., Schermann, N., Galic, N., Berthellot, J. F., Chesneau, V., Ferte, H., Mercier, F., Osman, A., Pino, S. and Goldringer, I. (2013) Phenotypic diversity and evolution of farmer varieties of bread wheat on organic farms in Europe. Genet resour crop evol, 60 (1) 145-163.

Khan A. R., Enjalbert J., Marsolier A.-C., Rousselet A., Goldringer I., Vitte C. (2013) Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat. BMC Plant Biology, 13 209.

Pautasso, M., ..., Goldringer, I., ..., Thomas, M. and Tramontini, S. (2013) Seed exchange networks for agrobiodiversity conservation. A review. Agron Sustain Dev, 33 (1) 151-175.


Allard, V., Veisz, O., Koszegi, B., Rousset, M., Le Gouis, J. and Martre, P. (2012) The quantitative response of wheat vernalization to environmental variables indicates that vernalization is not a response to cold temperature. J Exp Bot, 63 (2) 847-57.

Bonneuil, C., Goffaux, R., Bonnin, I., Montalent, P., Hamon, C., Balfourier, F. and Goldringer, I. (2012) A new integrative indicator to assess crop genetic diversity. Ecol Indic, 23 280-289.

Dawson, J. C., Serpolay, E., Giuliano, S., Schermann, N., Galic, N., Chable, V. and Goldringer, I. (2012) Multi-trait evolution of farmer varieties of bread wheat after cultivation in contrasting organic farming systems in Europe. Genetica, 140 (1-3) 1-17.

* de Vallavieille-Pope, C., Ali, S., Leconte, M., Enjalbert, J., Delos, M. and Rouzet, J. (2012) Virulence Dynamics and Regional Structuring of Puccinia striiformis f. sp tritici in France Between 1984 and 2009. Plant Disease, 96 (1) 131-140.

Le Gouis, J., Bordes, J., Ravel, C., Heumez, E., Faure, S., Praud, S., Galic, N., Remoue, C., Balfourier, F., Allard, V. and Rousset, M. (2012) Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat. Theor Appl Genet, 124 (3) 597-611.

* Mboup, M., Bahri, B., Leconte, M., De Vallavieille-Pope, C., Kaltz, O. and Enjalbert, J. (2012) Genetic structure and local adaptation of European wheat yellow rust populations: the role of temperature-specific adaptation. Evol Appl, 5 (4) 341-352.

Thomas, M., Demeulenaere, E., Dawson, J. C., Khan, A. R., Galic, N., Jouanne-Pin, S., Remoue, C., Bonneuil, C. and Goldringer, I. (2012) On-farm dynamic management of genetic diversity: the impact of seed diffusions and seed saving practices on a population-variety of bread wheat. Evol Appl, 5 (8) 779-95.


* Ali, S., Gautier, A., Leconte, M., Enjalbert, J. and de Vallavieille-Pope, C. (2011) A rapid genotyping method for an obligate fungal pathogen, Puccinia striiformis f.sp. tritici, based on DNA extraction from infected leaf and Multiplex PCR genotyping. BMC Res Notes, 4 240.

* Bahri, B., Shah, S., Hussain, S., Leconte, M., Enjalbert, J. and de Vallavieille, C. (2011) Genetic diversity of wheat yellow rust in Pakistan and its relation with host resistance. Plant Pathology, 60 (4) 649-660.

Dawson, J. C., Rivière, P., Berthellot, J.-F., Mercier, F., de Kochko, P., Galic, N., Pin, S., Serpolay, E., Thomas, M., Giuliano, S. and Goldringer, I. (2011) Collaborative Plant Breeding for Organic Agricultural Systems in Developed Countries. Sustainability, 3 (8) 1206-1223.

Enjalbert, J., Dawson, J. C., Paillard, S., Rhone, B., Rousselle, Y., Thomas, M. and Goldringer, I. (2011) Dynamic management of crop diversity: From an experimental approach to on-farm conservation. C R Biol, 334 (5-6) 458-68.

Rousselle, Y., Thomas, M., Galic, N., Bonnin, I. and Goldringer, I. (2011) Inbreeding depression and low between-population heterosis in recently diverged experimental populations of a selfing species. Heredity (Edinb), 106 (2) 289-99.

Rousset, M., Bonnin, I., Remoue, C., Falque, M., Rhone, B., Veyrieras, J. B., Madur, D., Murigneux, A., Balfourier, F., Le Gouis, J., Santoni, S. and Goldringer, I. (2011) Deciphering the genetics of flowering time by an association study on candidate genes in bread wheat (Triticum aestivum L.). Theor Appl Genet, 123 (6) 907-26.

Serpolay, E., Dawson, J. C., Chable, V., Lammerts Van Bueren, E., Osman, A., Pino, S., Silveri, D. and Goldringer, I. (2011) Diversity of different farmer and modern wheat varieties cultivated in contrasting organic farming conditions in western Europe and implications for European seed and variety legislation. Organic Agriculture, 1 (3) 127-145.

Serpolay, E., Schermann, N., Dawson, J., Lammerts van Bueren, E. T., Isabelle Goldringer, I. and Chable, V. (2011) Phenotypic Changes in Different Spinach Varieties Grown and Selected under Organic Conditions. Sustainability, 3 (9) 1616-1636.

Thomas, M., Dawson, J. C., Goldringer, I. and Bonneuil, C. (2011) Seed exchanges, a key to analyze crop diversity dynamics in farmer-led on-farm conservation. Genet resour crop evol, 58 (3) 321-338.


  • * Duan, X., Tellier, A., Wan, A., Leconte, M., de Vallavieille-Pope, C. and Enjalbert, J. (2010) Puccinia striiformis f.sp. tritici presents high diversity and recombination in the over-summering zone of Gansu, China. Mycologia, 102 (1) 44-53.

  • Rhoné, B., Vitalis, R., Goldringer, I. and Bonnin, I. (2010) Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection. Evolution, 64 (7) 2110-25.


  • Bérard, A., Le Paslier, M. C., Dardevet, M., Exbrayat-Vinson, F., Bonnin, I., Cenci, A., Haudry, A., Brunel, D. and Ravel, C. (2009) High-throughput single nucleotide polymorphism genotyping in wheat (Triticum spp.). Plant Biotechnol J, 7 (4) 364-74.

  • Ostergard, H., Finckh, M. R., Fontaine, L., Goldringer, I., Hoad, S. P., Kristensen, K., van Bueren, E. T. L., Mascher, F., Munk, L. and Wolfe, M. S. (2009) Time for a shift in crop production: embracing complexity through diversity at all levels. Journal of the Science of Food and Agriculture, 89 (9) 1439-1445.


  • Bonnin, I., Rousset, M., Madur, D., Sourdille, P., Dupuits, C., Brunel, D. and Goldringer, I. (2008) FT genome A and D polymorphisms are associated with the variation of earliness components in hexaploid wheat. Theor Appl Genet, 116 (3) 383-94.

  • Raquin, A. L., Brabant, P., Rhone, B., Balfourier, F., Leroy, P. and Goldringer, I. (2008) Soft selective sweep near a gene that increases plant height in wheat. Mol Ecol, 17 (3) 741-56.

  • Raquin, A. L., Depaulis, F., Lambert, A., Galic, N., Brabant, P. and Goldringer, I. (2008) Experimental estimation of mutation rates in a wheat population with a gene genealogy approach. Genetics, 179 (4) 2195-211.

  • Rhoné, B., Remoue, C., Galic, N., Goldringer, I. and Bonnin, I. (2008) Insight into the genetic bases of climatic adaptation in experimentally evolving wheat populations. Mol Ecol, 17 (3) 930-43.

  • Siol, M., Prosperi, J. M., Bonnin, I. and Ronfort, J. (2008) How multilocus genotypic pattern helps to understand the history of selfing populations: a case study in Medicago truncatula. Heredity (Edinb), 100 (5) 517-25.

  • van Bueren, E. T. L., Ostergard, H., Goldringer, I. and Scholten, O. (2008) Plant breeding for organic and sustainable, low-input agriculture: dealing with genotype-environment interactions. Euphytica, 163 (3) 321-322.

  • Wolfe, M. S., Baresel, J. P., Desclaux, D., Goldringer, I., Hoad, S., Kovacs, G., Loschenberger, F., Miedaner, T., Ostergard, H. and van Bueren, E. T. L. (2008) Developments in breeding cereals for organic agriculture. Euphytica, 163 (3) 323-346.