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Publications

2012

  • Cañas, R. A., Quilleré, I., Gallais, A. , Hirel, B. (2012) Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield? New Phytol, 194 440–452.
  • Durand, E., Bouchet, S., Bertin, P., Ressayre, A., Jamin, P., Charcosset, A., Dillmann, C., Tenaillon, M. I. (2012) Flowering time in maize: Linkage and epistasis at a major effect locus. Genetics, 190 1547–1562.
  • Larièpe, A., Mangin, B., Jasson, S., Combes, V., Dumas, F., Jamin, P., Lariagon, C., Jolivot, D., Madur, D., Fiévet, J., Gallais, A., Dubreuil, P., Charcosset, A., Moreau, L. (2012) The genetic basis of heterosis: Multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.). Genetics, 190 795–811.
  • Rincent, R., Laloë, D., Nicolas, S., Altmann, T., Brunel, D., Revilla, P., Rodríguez, V. M., Moreno-Gonzalez, J., Melchinger, A., Bauer, E., Schoen, C.-C., Meyer, N., Giauffret, C., Bauland, C., Jamin, P., Laborde, J., Monod, H., Flament, P., Charcosset, A. , Moreau, L. (2012) Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: Comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics, 192 715–728.
  • Sosnowski, O., Charcosset, A. , Joets, J. (2012) BioMercator V3: An upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics, 28 2082–2083.
  • Truntzler, M., Ranc, N., Sawkins, M. C., Nicolas, S., Manicacci, D., Lespinasse, D., Ribière, V., Galaup, P., Servant, F., Muller, C., Madur, D., Betran, J., Charcosset, A. , Moreau, L. (2012) Diversity and linkage disequilibrium features in a composite public/private dent maize panel: Consequences for association genetics as evaluated from a case study using flowering time. Theor Appl Genet, 125 731–747.
  • Zerjal, T., Rousselet, A., Mhiri, C., Combes, V., Madur, D., Grandbastien, M.-A., Charcosset, A., Tenaillon, M. I. (2012) Maize genetic diversity and association mapping using transposable element insertion polymorphisms. Theor Appl Genet, 124(8):1521-37.

2010

  • Capelle, V., Remoue, C., Moreau, L., Reyss, A., Mahe, A., Massonneau, A., Falque, M., Charcosset, A., Thevenot, C., Rogowsky, P., Coursol, S., Prioul, J.-L. (2010) QTLs and candidate genes for desiccation and abscisic acid content in maize kernels. BMC Plant Biol, 10: 2-22.
  • Cassan, L., Moreau, L., Segouin, S., Bellamy, A., Falque, M.,Limami, A. M. (2010) Genetic map construction and quantitative trait loci (QTL) mapping for nitrogen use efficiency and its relationship with productivity and quality of the biennial crop Belgian endive (Cichorium intybus L.). J Plant Physiol, 167: 1253–1263 .
  • Durand, E., Tenaillon, M. I., Ridel, C., Coubriche, D., Jamin, P., Jouanne, S., Ressayre, A., Charcosset, A., Dillmann, C. (2010) Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds. BMC Evol Biol, 10: 2-21.
  • Fiévet, J. B., Dillmann, C., de Vienne, D. (2010). Systemic properties of metabolic networks lead to an epistasis-based model for heterosis. Theor Appl Genet, 120: 463–473.
  • Huang, Y.-F., Madur, D., Combes, V., Ky, C. L., Coubriche, D., Jamin, P., Jouanne, S., Dumas, F., Bouty, E., Bertin, P., Charcosset, A.,Moreau, L. (2010) The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations. Genetics, 186: 395–404.
  • Truntzler, M., Barrière, Y., Sawkins, M. C., Lespinasse, D., Betran, J., Charcosset, A.,Moreau, L. (2010) Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes. Theor Appl Genet, 121: 1465-1482.

2009

  • Ducrocq, S., Giauffret, C., Madur, D., Combes, V., Dumas, F., Jouanne, S., Coubriche, D., Jamin, P., Moreau, L.,Charcosset, A. (2009) Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10. Genetics, 183: 1555–1563.
  • Gallais, A. (2009) Full-Sib Reciprocal Recurrent Selection with the Use of Doubled Haploids. Crop Science, 49: 150–152.
  • Jannink, J.-L., Moreau, L., Charmet, G.,Charcosset, A. (2009) Overview of QTL detection in plants and tests for synergistic epistatic interactions. Genetica, 136: 225–236.
  • Manicacci, D., Camus-Kulandaivelu, L., Fourmann, M., Arar, C., Barrault, S., Rousselet, A., Feminias, N., Consoli, L., Francès, L., Méchin, V., Murigneux, A., Prioul, J.-L., Charcosset, A., Damerval, C. (2009) Epistatic Interactions between Opaque2 Transcriptional Activator and Its Target Gene CyPPDK1 Control Kernel Trait Variation in Maize. Plant Physiol, 150: 506–520.

2008

  • Blanc,G. Charcosset,A. Veyrieras,J B. Gallais,A. Moreau,L. 2008. Marker-assisted selection efficiency in multiple connected populations: a simulation study based on the results of a QTL detection experiment in maize Euphytica 161 : 71-84.
  • Camus-Kulandaivelu,L. Chevin,L M. Tollon-Cordet,C. Charcosset,A. Manicacci,D. Tenaillon,M I. 2008. Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics 180 : 1107-1121.
  • Coque,M. Martin,A. Veyrieras,J B. Hirel,B. Gallais,A. 2008. Genetic variation for N-remobilization and postsilking N-uptake in a set of maize recombinant inbred lines. 3. QTL detection and coincidences. Theor Appl Genet 117(5) : 729-747.
  • Ducrocq,S. Madur,D. Veyrieras,J B. Camus-Kulandaivelu,L. Kloiber-Maitz,M. Presterl,T. Ouzunova,M. Manicacci,D. Charcosset,A. 2008. Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics 178 : 2433-2437.
  • Gallais,A. Carle,J. Simplot-Ryl,D. Stojmenovic,I. 2008. Localized sensor area coverage with low communication overhead Ieee Transactions On Mobile Computing 7 : 661-672.

2007

  • Camus-Kulandaivelu, L., J.B. Veyrieras, B. Gouesnard, A. Charcosset, and D. Manicacci. 2007. Evaluating the reliability of STRUCTURE outputs in case of relatedness between individuals. Crop Sci 47 : 885-890.
  • Gallais, A.,Bordes, J. (2007) The use of doubled haploids in recurrent selection and hybrid development in maize. Crop Science, 47 S190–S201.
  • Gallais, A., Coque, M., Le Gouis, J., Prioul, J.-L., Hirel, B.,Quillere, I. (2007) Estimating the proportion of nitrogen remobilization and of postsilking nitrogen uptake allocated to maize kernels by nitrogen-15 labeling. Crop Science, 47: 685–693.
  • Gallais A., Moreau L., Charcosset A. (2007) Detection of marker-QTL associations by studying change in marker frequencies with selective genotyping. Theor Appl Genet, 114 (4): 669-681
  • Hirel, B., Gouis, J. L., Ney, B.,Gallais, A. (2007) The challenge of improving nitrogen use efficiency in crop plants: Towards a more central role for genetic variability and quantitative genetics within integrated approaches. J Exp Bot, 58: 2369–2387.
  • Veyrieras, J.B., Goffinet B., and Charcosset A. (2007) MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments. BMC Bioinformatics 8(1):49.
  • Veyrieras, J.-B., Camus-Kulandaivelu, L., Gouesnard, B., Manicacci, D.,Charcosset, A. (2007) Bridging genomics and genetic diversity: Linkage disequilibrium structure and association mapping in maize and other cereals. Crop Science, 47: S60–S71.

2006

  • Bernardo R., Charcosset A. (2006) Usefulness of Gene Information in Marker-Assisted Recurrent Selection: A Simulation Appraisal. Crop Science 46:614-621
  • Bernardo, R., L. Moreau, and A. Charcosset. (2006) Number and Fitness of Selected Individuals in Marker-Assisted and Phenotypic Recurrent Selection. Crop Sci 46:1972-1980.
  • Blanc, G., Charcosset A., Mangin B., Gallais A., Moreau L. (2006) Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize. Theoretical and Applied Genetics 113:206-224.
  • Bordes, J., Charmet, G., Dumas de Vaulx, R., Pollacsek, M., Beckert, M., Gallais, A. (2006). Doubled haploid versus S1 family recurrent selection for testcross performance in a maize population. Theor. Appl. Genet. 112: 1063-1072.
  • Camus-kulandaivelu, L., Veyrieras, J.-B., Madur, D., Combes, L., Fourmann, M., Barraud, S., Dubreuil, P., Gouesnard, B., Manicacci, D., Charcosset, A. (2006). Maize Adaptation to Temperate Climate: Relationship Between Population Structure and Polymorphism in the Dwarf8 Gene. Genetics, 172: 2449-2463.
  • Coque, M., Bertin, P., Hirel, B., Gallais, A. (2006). Genetic variation and QTLs for 15N natural abundance in a set of maize recombinant inbred lines. Field crops Res. 97: 310-321.
  • Coque, M., Gallais, A. (2006). Genomic regions involved in response to grain yield selection at high and low nitrogen fertilization in maize. Theor. Appl. Genet. 112, 1205-1220.
  • Diaz, U., Saliba-Colombani, V., Loudet, O., Belluomo, P., Moreau, L., Daniel-Vedele, F., Morot-Gaudry, J. F.,Maselaux-Daubresse, U. (2006) Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana. Plant And Cell Physiology, 47 74–83.
  • Dubreuil P., Warburton M., Chastanet M., Hoisington D., Charcosset A. (2006) More on the introduction of temperate maize into Europe: large-scale bulk SSR genotyping and new historical elements Maydica, 51:281-291 Don Duvick issue, soumis sur invitation
  • Fiévet, J., Dillman, C., Curien, G., de Vienne, D. (2006). Simplified modelling of metabolic pathways for flux prediction and optimization: lessons from an in vitro reconstruction of the upper part of glycolysis. Biochem. J. 396, 317-326.
  • Gallais, A., Coque, M., Quillère, I., Prioul, J.-L., Hirel, B. (2006). Modelling postsilking nitrogen fluxes in maize (Zea mays) using 15N-labelling field experiments. New Phytol. 172-4, 696-707.
  • Hirel, B., Gallais, A. (2006). Rubisco synthesis, turnover and degradation: some new thoughts on an old problem. New Phytol. 169, 445-448.
  • Jahier, J., Chalhoub, B.,Charcosset, A. (2006) The domestification of plants: From the gather to post-genomics. Biofutur, 28–33.
  • Martin, A., J. Lee, T. Kichey, D. Gerentes, M. Zivy, C. Tatout, F. Dubois, T. Balliau, B. Valot, M. Davanture, T. Terce-Laforgue, I. Quillere, M. Coque, A. Gallais, M.B. Gonzalez-Moro, L. Bethencourt, D.Z. Habash, P.J. Lea, A. Charcosset, P. Perez, A. Murigneux, H. Sakakibara, K.J. Edwards, and B. Hirel. (2006). Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell ,18:3252-3274.
  • Pommel, B., Gallais, A., Coque, M., Quillère, I., Hirel, B., Prioul, J.-L., Andrieu, B. (2006). Carbon and Nitrogen allocation and grain filling in three maize hybrids differing in leaf senescence. Europ. J. Agronomy 24, 203-211.