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Publication

2019

09/04/19

Allier A., Teyssedre S., Lehermeier C., Claustres B., Maltese S., Melkior S., Moreau L. and Charcosset A. (2019) Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program. Theor Appl Genet, Epub ahead of print.

Allier A., Moreau L., Charcosset A., Teyssèdre S., Lehermeier C. (2019) Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression. G3 (Bethesda, Md.), Epub ahead of print.

Belouah I., Blein-Nicolas M., Balliau T., Gibon Y., Zivy M. and Colombie S. (2019) Peptide filtering differently affects the performances of XIC-based quantification methods. J Proteomics, 193 131-141.

Boussardon C., Martin-Magniette M.-L., Godin B., Benamar A., Vittrant B., Citerne S., Mary-Huard T., Macherel D., Rajjou L., Budar F. (2019) Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor. Front Plant Sc, 10 32.

Carreté L., Ksiezopolska E., Gómez-Molero E., Angoulvant A., Bader O., Fairhead C., Gabaldón T. (2019) Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Front Microbiol, 10 112.

Chauffour F., Bailly M., Perreau F., Cueff G., Suzuki H., Collet B., Frey A., Clément G., Soubigou-Taconnat L., Balliau T., Krieger-Liszkay A., Rajjou L., Marion-Poll A. (2019) Multi-omics analysis reveals sequential roles for ABA during seed maturation. Plant Physiol, pp.00338.2019.

Cui J., Davanture M., Zivy M., Lamade E. and Tcherkez G. (2019) Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm. New Phytol, Epub ahead of print.

Damerval C., Citerne H., Conde E Silva N., Deveaux Y., Delannoy E., Joets J., Simonnet F., Staedler Y., Schonenberger J., Yansouni J., Le Guilloux M., Sauquet H. and Nadot S. (2019) Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae. Front Plant Sci, 10 18.

Fairhead C., Fischer G., Liti G., Neuveglise C. and Schacherer J. (2019) Andre Goffeau's imprinting on second generation yeast "genomologists". Yeast, Epub ahead of print.

Gabaldon T. and Fairhead C. (2019) Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal. Curr Genet, 65 (1) 93-98.

Lecarpentier C., Barillot R., Blanc E., Abichou M., Goldringer I., Barbillon P., Enjalbert J. and Andrieu B. (2019) WALTer: a three-dimensional wheat model to study competition for light through the prediction of tillering dynamics. Ann Bot, Epub ahead of print.

Mangin B., Rincent R., Rabier C.-E., Moreau L., Goudemand-Dugue E. (2019) Training set optimization of genomic prediction by means of EthAcc.  PLoS One, 14 (2) e0205629.

Martinez Palacios P., Jacquemot M. P., Tapie M., Rousselet A., Diop M., Remoue C., Falque M., Lloyd A., Jenczewski E., Lassalle G., Chevre A. M., Lelandais C., Crespi M., Brabant P., Joets J. and Alix K. (2019) Assessing the response of small RNA populations to allopolyploidy using resynthesized Brassica napus allotetraploids. Mol Biol Evol, 36 (4) 709–726.

Peace C. P., ... Cornille A., ..., Vanderzande S. (2019) Apple whole genome sequences: recent advances and new prospects. Nature Comm, Horticulture Res, 6 (1) 59.

Petrizzelli M., de Vienne D. and Dillmann C. (2019) Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. Genetics, 211 (2) 741-756.

Rio S., Mary-Huard T., Moreau L. and Charcosset A. (2019) Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel. Theor Appl Genet, 132 (1) 81-96.

Rusconi F (2019) mineXpert: biological mass spectrometry data visualization and mining with full JavaScript-ability. J Proteome Res, Epub ahead of print.

Seye A. I., Bauland C., Giraud H., Mechin V., Reymond M., Charcosset A. and Moreau L. (2019) Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield. Theor Appl Genet, Epub ahead of print.

Srisuwan S., Sihachakr D., Martin J., Valles J., Ressayre A., Brown S. C. and Siljak-Yakovlev S. (2019) Change in nuclear DNA content and pollen size with polyploidisation in the sweet potato (Ipomoea batatas, Convolvulaceae) complex. Plant Biol, 21 (2) 237-247.

Urien C., Legrand J., Montalent P., Casaregola S. and Sicard D. (2019) Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour. Front Microbiol, Epub ahead of print.

 

2018
____________________________________________________________________________________

20/11/18

Alaux M., ... Steinbach D., Adam-Blondon A. F., Quesneville H. (2018) Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biol, 19 (1) 111.

Albert B., Ressayre A., Dillmann C., Carlson A. L., Swanson R. J., Gouyon P. H., Dobritsa A. A. (2018) Effect of aperture number on pollen germination, survival and reproductive success in Arabidopsis thaliana. Ann Bot, 121 (4) 733-740. Chief Editor's choice

Aloui A., Recorbet G., Lemaitre-Guillier C., Mounier A., Balliau T., Zivy M., Wipf D., Dumas-Gaudot E. (2018) The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis. Mycorrhiza, 28 (1) 1-16.

Amirchakhmaghi N., Yousefzadeh H., Hosseinpour B., Espahbodi K., Aldaghi M., Cornille A. (2018) First insight into genetic diversity and population structure of the Caucasian wild apple in the Hyrcanian forest (Iran) and its resistance to apple scab and powdery mildew. Genetic Resources and Crop Evolution,  65 (4) 1255–1268.

Balliau T., Blein-Nicolas M., Zivy M. (2018) Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics. Proteomes, 6 (1).

Berrabah F., Balliau T., Ait-Salem E. H., George J., Zivy M., Ratet P., Gourion B. (2018) Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia. New Phytol, 219 (1) 310-323.

Besnard G., Terral J. F., Cornille A. (2018) On the origins and domestication of the olive: a review and perspectives. Ann Bot, 121 (3) 385-403. Hightlight in Botany ONE
Besnard G., Terral J. F., Cornille A. (2018) On the origins and domestication of the olive: a review and perspectives (Corr). Ann Bot, 121 (3) 587-588 Erratum.

Bichang'a G., Da Lage J. L., Capdevielle-Dulac C., Zivy M., Balliau T., Sambai K., Le Ru B., Kaiser L., Juma G., Maina E. N. M., Calatayud P. A. (2018) alpha-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes. J Chem Ecol, 44 (11) 1030-1039.

Borg J., Kiær L. P., Lecarpentier C., Goldringer I., Gauffreteau A., Saint-Jean S., Barot S., Enjalbert A. (2018) Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps. Field Crops Res, 221 298-313.

Carbonetto B., Ramsayer J., Nidelet T., Legrand J., Sicard D. (2018)  Bakery yeasts, a new model for studies in ecology and evolution. Yeast, 35 (11) 591-603. Review.

Carrete L., Ksiezopolska E., Pegueroles C., Gomez-Molero E., Saus E., Iraola-Guzman S., Loska D., Bader O., Fairhead C., Gabaldon T. (2018) Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans. Curr Biol, 28 (1) 15-27 e7.

Collot D., Nidelet T., Ramsayer J., Martin O.C., Méléard S., Dillmann C., Sicard D., Legrand J. (2018) Feedback between environment and traits under selection in a seasonal environment: consequences for experimental evolution. Proc Biol Sci, B. 284 (1876).

Damerval C., Ben Othman W., Manicacci D., Jabbour F. (2018) Distribution area of the two floral morphs of Nigella damascena L. (Ranunculaceae): A diachronic study using herbarium specimens collected in France. Bot Lett, 165 (3-4) 396-403.

Dard-Dascot C., Naquin D., d'Aubenton-Carafa Y., Alix K., Thermes C., van Dijk E. (2018) Systematic comparison of small RNA library preparation protocols for next-generation sequencing. BMC Genomics, 19 (1) 118.

Darracq A.*, Vitte C.*, Nicolas S., Duarte J., Pichon J. P., Mary-Huard T., Chevalier C., Berard A., Le Paslier M. C., Rogowsky P., Charcosset A., Joets J. (2018) Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants. BMC Genomics, 19 (1) 119 *Equal contributors.

Fievet J., Nidelet T., Dillmann C., de Vienne D. (2018) Heterosis is a systemic property emerging from nonlinear genotype-phenotype relationships: evidence from in vitro genetics and computer simulations. Front Genet, 9 159. F1000Prime, 12 Jul 2018

Grigolon S., Bravi B., Martin O. C. (2018) Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience. R Soc open sci, 5 (1) 172098.

Havé M., Balliau T., Cottyn-Boitte B., Derond E., Cueff G., Soulay F., Lornac A., Reichman P., Dissmeyer N., Avice J. C., Gallois P., Rajjou L., Zivy M., Masclaux-Daubresse C. (2018) Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect? J Exp Bot, 69 (6) 1369-1385.

Käfer J., Betancourt A., Villain A. S., Fernandez M., Vignal C., Marais G. A. B., Tenaillon M. I. (2018) Progress and Prospects in Gender Visibility at SMBE Annual Meetings. Genome Biol Evol, 10 (3) 901-908.

Lafon-Placette C., Hatorangan M. R., Steige K. A., Cornille A., Lascoux M., Slotte T., Kohler C. (2018) Paternally expressed imprinted genes associate with hybridization barriers in Capsella. Nat Plants, 4 (6) 352-357.

Lamichhane J. R., Arseniuk E., Boonekamp P., Czembor J., Decroocq V., Enjalbert J., Finckh M. R., Korbin M., Koppel M., Kudsk P., Mesterhazy A., Sosnowska D., Zimnoch-Guzowska E., Messean A. (2017) Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective. Pest Manag Sci, 74 (6) 1219-1227.

Odonkor S., Choi S., Chakraborty D., Martinez-Bello L., Wang X., Bahri B. A., Tenaillon M. I., Panaud O., Devos K. M. (2018) QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica. Front Plant Sci, 9 918.

Perronne R., Goldringer I. (2018) Application of a partitioning procedure based on Rao quadratic entropy index to characterize the temporal evolution of in situ varietal and genetic diversity of bread wheat in France over the period 1981-2006. Theor Appl Genet, 131 (4) 775-786.

Raffoux X., Bourge M., Dumas F., Martin O. C., Falque M. (2018) High throughput measurement of recombination rates and genetic interference in S. cerevisiae. Yeast, 35 (6) 431-442.

Raffoux X., Bourge M., Dumas F., Martin O. C. and Falque M. (2018) Role of cis, trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae. Genetics, 210 (4) 1213-1226.

Ruhsam M., Jessop W., Cornille A., Renny J. and Worrell R. (2018) Crop-to-wild introgression in the European wild apple Malus sylvestris in Northern Britain. Forestry, cpy033.

   

2017
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16/07/18

Aguirre-Liguori J. A., Tenaillon M. I., Vazquez-Lobo A., Gaut B. S., Jaramillo-Correa J. P., Montes-Hernandez S., Souza V., Eguiarte L. E. (2017) Connecting genomic patterns of local adaptation and niche suitability in teosintes. Mol Ecol, 26 (16) 4226-4240.

Akakpo R., Scarcelli N., Chair H., Dansi A., Djedatin G., Thuillet A. C., Rhone B., Francois O., Alix K., Vigouroux Y. (2017) Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. BMC Genomics, 18 (1) 782.

Ali S., Sharma A., Leconte M., Shah D. A., Duveiller E., Enjalbert A., De Vallavieille C. (2017) Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal). Plant Pathol, 67 (4) 810-820.

Alix K., Gérard P. R., Schwarzacher T., Heslop-Harrison J. S. (2017) Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants. Ann Bot, 120 (2) 183-194.

Baldy A., Jacquemot M.-P., Griveau Y., Bauland C., Reymond M., Mechin V. (2017) Energy Values of Registered Corn Forage Hybrids in France over the Last 20 Years Rose in a Context of Maintained Yield Increase. Am J Plant Science, 8 (9) 1449-1461.

Barot S., Allard V., Cantarel A., Enjalbert J., Gauffreteau A., Goldringer I., Lata J.-C., Le Roux X., Niboyet A., Porcher E. (2017) Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agron Sustain Dev, 37 (13)

Bedoya C. A., Dreisigacker S., Hearne S., Franco J., Mir C., Prasanna B. M., Taba S., Charcosset A., Warburton M. L. (2017) Genetic diversity and population structure of native maize populations in Latin America and the Caribbean. PLoS One, 12 (4) e0173488.

Bolotin-Fukuhara M. (2017) Thirty years of the HAP2/3/4/5 complex. Biochim Biophys Acta - Gene Regul Mech, 1860 (5) 543-559.

Bonnot T., Bancel E., Alvarez D., Davanture M., Boudet J., Pailloux M., Zivy M., Ravel C., Martre P. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. Plant J, 91 (5) 894-910.

Bouchet S., Bertin P., Presterl T., Jamin P., Coubriche D., Gouesnard B., Laborde J., Charcosset A. (2017) Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits. Heredity (Edinb), 118 (3) 249-259.

Brandenburg J. T., Mary-Huard T., Rigaill G., Hearne S. J., Corti H., Joets J., Vitte C., Charcosset A., Nicolas S. D., Tenaillon M. I. (2017) Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts. PLoS Genet, 13 (3) e1006666.

Brault V., Delattre M., Lebarbier E., Levy-Leduc C., Mary-Huard T. (2017) Estimating the Number of Block Boundaries from Diagonal Blockwise Matrices Without Penalization. Scand J Statistics, 44 (2) 563-580.

Bukreyeva I., Angoulvant A., Bendib I., Gagnard J. C., Bourhis J. H., Dargere S., Bonhomme J., Thellier M., Gachot B., Wyplosz B. (2017) Enterocytozoon bieneusi Microsporidiosis in Stem Cell Transplant Recipients Treated with Fumagillin1. Emerg Infect Dis, 23 (6) 1039-1041.

Canas R. A., Yesbergenova-Cuny Z., Simons M., Chardon F., Armengaud P., Quillere I., Cukier C., Gibon Y., Limami A. M., Nicolas S., Brule L., Lea P. J., Maranas C. D., Hirel B. (2017) Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. Plant Cell, 29 (5) 919-943.

Chiquet J., Mary-Huard T., Rogbin S. (2017) Structured regularization for conditional Gaussian graphical models. Stat Comput, 27 (3) 789-804.

Citerne H. L., Reyes E., Le Guilloux M., Delannoy E., Simonnet F., Sauquet H., Weston P. H., Nadot S., Damerval C. (2017) Characterization of CYCLOIDEA-like genes in Proteaceae, a basal eudicot family with multiple shifts in floral symmetry. Ann Bot, 119 (3) 367-378.

Damerval C., Becker A. (2017) Genetics of flower development in Ranunculales - a new, basal eudicot model order for studying flower evolution. New Phytol, 216 (2) 361-366.

Damerval C., Nadot S. (2017) Letter to the 21st century botanist: "What is a flower?" 6. The evo-devo of floral symmetry. Bot Lett, 164 (3) 193-196.

Delatola E. I., Lebarbier E., Mary-Huard T., Radvanyi F., Robin S., Wong J. (2017) SegCorr a statistical procedure for the detection of genomic regions of correlated expression. BMC Bioinformatics, 18 (1) 333.

Demeulenaere E., Goldringer I. (2017) Semences et transcription agroécologique : initiatives paysannes et sélection participative comme innovations de rupture. Nat Sci Soc, 25 (S55-S59).

Demeulenaere E., Rivière P., Hyacinthe A., Baltassat R., Baltazar S., Gascuel J.-S., Lacanette J., Montaz H., Pin S., Ranke O., Serpolay-Besson E., Thomas M., Van Frank G., Vanoverschelde M., Vindras-Fouillet C., Goldringer I. (2017) La sélection participative à l’épreuve du changement d’échelle. À propos d’une collaboration entre paysans sélectionneurs et généticiens de terrain. Nat Sci Soc, 25 (4) 336-346.

Denis E., Kbiri N., Mary V., Claisse G., Conde E. S. N., Kreis M., Deveaux Y. (2017) WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J, 90 (3) 560-572.

Durufle H., Clemente H. S., Balliau T., Zivy M., Dunand C., Jamet E. (2017) Cell wall proteome analysis of Arabidopsis thaliana mature stems. Proteomics, 17 (8)

Durufle H., Herve V., Balliau T., Zivy M., Dunand C., Jamet E. (2017) Proline Hydroxylation in Cell Wall Proteins: Is It Yet Possible to Define Rules? Front Plant Sci, 8 1802.

Durufle H., Herve V., Ranocha P., Balliau T., Zivy M., Chourre J., San Clemente H., Burlat V., Albenne C., Dejean S., Jamet E., Dunand C. (2017) Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study. Plant Sci, 263 183-193.

Edel K. H., Marchadier E., Brownlee C., Kudla J., Hetherington A. M. (2017) The Evolution of Calcium-Based Signalling in Plants. Review. Curr Biol, 27 (13) R667-R679.

Fustier M. A., Brandenburg J. T., Boitard S., Lapeyronnie J., Eguiarte L. E., Vigouroux Y., Manicacci D., Tenaillon M. I. (2017) Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples. Mol Ecol, 26 (10) 2738-2756.

Galland M., ..., Valot B., Rajjou L. (2017) An Integrated "Multi-Omics" Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Front Plant Sci, 8 1984.

Giraud H., Bauland C., Falque M., Madur D., Combes V., Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A., Moreau L. (2017) Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.). G3 (Bethesda), 7 (11) 3649-3657.

Giraud H., Bauland C., Falque M., Madur D., Combes V., Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A., Moreau L. (2017) Reciprocal Genetics: Identifying QTLs for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups. Genetics, 207 (3) 1167-1180.

Gouesnard B., Negro S., Laffray A., Glaubitz J., Melchinger A., Revilla P., Moreno-Gonzalez J., Madur D., Combes V., Tollon-Cordet C., Laborde J., Kermarrec D., Bauland C., Moreau L., Charcosset A., Nicolas S. (2017) Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank. Theor Appl Genet, 130 (10) 2165–2189.

Jean N., Dumont E., Herzi F., Balliau T., Laabir M., Masseret E., Mounier S. (2017) Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions. Aquat Toxicol, 188 80-91.

Lamichhane J. R., Arseniuk E., Boonekamp P., Czembor J., Decroocq V., Enjalbert J., Finckh M. R., Korbin M., Koppel M., Kudsk P., Mesterhazy A., Sosnowska D., Zimnoch-Guzowska E., Messean A. (2017) Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective. Pest Manag Sci, 74 (6) 1219-1227.

Langella O., Valot B., Balliau T., Blein-Nicolas M., Bonhomme L., Zivy M. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J Proteome Res, 16 (2) 494-503.

Laporte F., Charcosset A., Mary-Huard T. (2017) Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs. Biometrics, 73 (3) 885-894.

Lariepe A., Moreau L., Laborde J., Bauland C., Mezmouk S., Decousset L., Mary-Huard T., Fievet J. B., Gallais A., Dubreuil P., Charcosset A. (2017) General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents. Theor Appl Genet, 130 (2) 403-417.

Millan-Oropeza A., Henry C., Blein-Nicolas M., Aubert-Frambourg A., Moussa F., Bleton J., Virolle M. J. (2017) Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans. J Proteome Res, 16 (7) 2597-2613.

Negroni L., Zivy M., Lemaire C. (2017) Mass Spectrometry of Mitochondrial Membrane Protein Complexes. Methods Mol Biol, 1635 233-246.

Ousseini I. S., Bakasso Y., Kane N. A., Couderc M., Zekraoui L., Mariac C., Manicacci D., Rhone B., Barnaud A., Berthouly-Salazar C., Assoumane A., Moussa D., Moussa T., Vigouroux Y. (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity (Edinb), 119 (2) 88-94.

Pelé A., Falque M., Trotoux G., Eber F., Negre S., Gilet M., Huteau V., Lode M., Jousseaume T., Dechaumet S., Morice J., Poncet C., Coriton O., Martin O. C., Rousseau-Gueutin M., Chevre A. M. (2017) Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas. PLoS Genet, 13 (5) e1006794.

Perronne R., Diguet S., de Vallavieille-Pope C., Leconte M., Enjalbert J. (2017) A framework to characterize the commercial life cycle of crop varieties: Application to the case study of the influence of yellow rust epidemics on French bread wheat varieties. Field Crops Research, 209 159-167.

Perronne R., Makowski D., Goffaux R., Montalent P., Goldringer I. (2017) Temporal evolution of varietal, spatial and genetic diversity of bread wheat between 1980 and 2006 strongly depends upon agricultural regions in France. Agric Ecosyst Environ, 236 12-20.

Regente M., Pinedo M., San Clemente H., Balliau T., Jamet E., de la Canal L. (2017) Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth. J Exp Bot, 68 (20) 5485-5495.

Renvoise M., Bonhomme L., Davanture M., Zivy M., Lemaire C. (2017) Phosphoproteomic Analysis of Isolated Mitochondria in Yeast. Methods Mol Biol, 1636 283-299.

Richard M. M. S., Gratias A., Thareau V., Kim K. D., Balzergue S., Joets J., Jackson S. A., Geffroy V. (2017) Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family. DNA Res, 25 (2) 161-172.

Rincent R., Charcosset A., Moreau L. (2017) Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations. Theor Appl Genet, 130 (11) 2231-2247.

Rouzet A., Reboux G., Dalphin J. C., Gondouin A., De Vuyst P., Balliau T., Millon L., Valot B., Roussel S. (2017) An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. J Immunol Methods, 450 58-65.

Samal A., Martin O. C. (2017) Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes. J Genet, 96 (5) 795-800.

Senghor Y., Guitard J., Angoulvant A., Hennequin C. (2017) Cryptococcal antigen detection in broncho-alveolar lavage fluid. Med Mycol, Epub ahead of print

Villegente M., Marmey P., Job C., Galland M., Cueff G., Godin B., Rajjou L., Balliau T., Zivy M., Fogliani B., Sarramegna-Burtet V., Job D. (2017) A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes, 5 (3) 19.

   

2016
____________________________________________________________________________________

16/07/18

*Chaudron C., Perronne R., Bonthoux S., Di Pietro F. (2016) Influence of management practices on plant assemblages of road-field boundaries in two agricultural landscapes. Appl Veg Sci, 19 (4) 644–654.

*Di Pietro F., Chaudron C., Perronne R. (2016) Les dépendances vertes dans les paysages agricoles : prendre en compte les milieux adjacents à la route. VertigO - la revue électronique en sciences de l'environnement, HS 24

*Gibot-Leclerc S., Perronne R., Dessaint F., Reibel C., Le Corre V. (2016) Differences in the germination ability of genetically divergent pathovars of Phelipanche ramosa on Brassicaceae hosts? . Weed Res, 56 452-461

Abadie C., Mainguet S., Davanture M., Hodges M., Zivy M., Tcherkez G. (2016) Concerted Changes in the Phosphoproteome and Metabolome Under Different CO2/O2 Gaseous Conditions in Arabidopsis Rosettes. Plant Cell Physiol 57 (7) 1544-1556.

Ali S., Soubeyrand S., Gladieux P., Giraud T., Leconte M., Gautier A., Mboup M., Chen W., de Vallavieille-Pope C., Enjalbert J. (2016) CLONCASE: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms. Mol Ecol Resour, 16 (4) 845-61.

Angoulvant A., Guitard J., Hennequin C. (2016) Old and new pathogenic Nakaseomyces species: epidemiology, biology, identification, pathogenicity and antifungal resistance. FEMS Yeast Res, 16 (2)

Berthouly-Salazar C., Thuillet A. C., Rhone B., Mariac C., Ousseini I. S., Couderc M., Tenaillon M. I., Vigouroux Y. (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Mol Ecol, 25 (21) 5500-5512.

Blein-Nicolas M., Zivy M. (2016) Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics. Biochim Biophys Acta - Proteins and Proteom, 1864 (8) 883-95.

Bolotin-Fukuhara M., Fairhead C. (2016) Editorial: Candida glabrata, the other yeast pathogen. FEMS Yeast Res, 16 (2) fov116.

Bougnoux M. E., Dannaoui E., Accoceberry I., Angoulvant A., Bailly E., Botterel F., Chevrier S., Chouaki T., Cornet M., Dalle F., Datry A., Dupuis A., Fekkar A., Gangneux J. P., Guitard J., Hennequin C., Le Govic Y., Le Pape P., Maubon D., Ranque S., Sautour M., Sendid B., Chandenier J. (2016) Multicenter Comparison of the Etest and EUCAST Methods for Antifungal Susceptibility Testing of Candida Isolates to Micafungin. Antimicrob Agents Chemother, 60 (8) 5088-91.

Boutet G., Alves Carvalho S., Falque M., Peterlongo P., Lhuillier E., Bouchez O., Lavaud C., Pilet-Nayel M. L., Riviere N., Baranger A. (2016) SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. BMC Genomics, 17 (1) 121.

Cossart G., Sannier J., Sauquet H., Damerval C., Ronse de Craene L., Jabbour F., Nadot S. (2016) Subfamilial and tribal relationships of Ranunculaceae: evidence from eight molecular markers. Plant Syst Evol, 302 (4) 419–431.

Desclee de Maredsous C., Oozeer R., Barbillon P., Mary-Huard T., Delteil C., Blachier F., Tome D., van der Beek E. M., Davila A. M. (2016) High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age. J Nutr, 146 (1) 21-9.

Dobrenel T., Mancera-Martinez E., Forzani C., Azzopardi M., Davanture M., Moreau M., Schepetilnikov M., Chicher J., Langella O., Zivy M., Robaglia C., Ryabova L. A., Hanson J., Meyer C. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, 7 1611.

Durand J. L., Andrieu B., Barillot R., Barre P., Combes D., Enjalbert J., Escobar-Gutierrez A., Faverjon L., Lecarpentier C., Litrico I., Louarn G., Migault V., Sanchez L. (2016) Designing and improving mixed grasslands: advances made in modelling forage variety performance. Fourrages, (225) 21-28.

Fernandez O., Urrutia M., Bernillon S., Giauffret C., Tardieu F., Le Gouis J., Langlade N., Charcosset A., Moing A., Gibon Y. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics, 12 (10) 158.

Fiume E., Guyon V., Remoue C., Magnani E., Miquel M., Grain D., Lepiniec L. (2016) TWS1, a Novel Small Protein, Regulates Various Aspects of Seed and Plant Development. Plant Physiol, 172 (3) 1732-1745.

Friggens N. C., Duvaux-Ponter C., Etienne M. P., Mary-Huard T., Schmidely P. (2016) Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures. J Dairy Sci, 99 (4) 2704-18.

Hazard L., Gauffreteau A., Borg J., Charron M. H., Deo M., Enjalbert J., Goutiers V., Gressier E. (2016) Using innovative approaches to meet the challenges of a rapidly changing climate and world: the utility of co-design in plant breeding programmes. Fourrages, (225) 39-47.

Henry A., Martin O. C. (2016) Short relaxation times but long transient times in both simple and complex reaction networks. J R Soc Interface, 13 (120)

Herve V., Durufle H., Clemente H. S., Albenne C., Balliau T., Zivy M., Dunand C., Jamet E. (2016) An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Proteomics, 16 (24) 3183-3187.

Hosseini S. R., Martin O. C., Wagner A. (2016) Phenotypic innovation through recombination in genome-scale metabolic networks. Proc Biol Sci, 283 (1839)

Labeyrie V., Thomas M., Muthamia Z. K., Leclerc C. (2016) Seed exchange networks, ethnicity, and sorghum diversity. Proc Natl Acad Sci U S A, 113 (1) 98-103.

Legrand J., Bolotin-Fukuhara M., Bourgais A., Fairhead C., Sicard D. (2016) Life-history strategies and carbon metabolism gene dosage in the Nakaseomyces yeasts. FEMS Yeast Res, 16 (2)

Levy M., Pham L. L., Faye A., de Suremain N., Rambaud J., Angoulvant A., Miatello J., Dauger S., Naudin J. (2016) Parenteral Artesunate for Severe Imported Plasmodium falciparum Malaria in Children. Pediatr Infect Dis J, 35 (9) 1053-4.

Lhomme E., Urien C., Legrand J., Dousset X., Onno B., Sicard D. (2016) Sourdough microbial community dynamics: An analysis during French organic bread-making processes. Food Microbiol, 53 (Pt A) 41-50.

Marchadier E., Oates M. E., Fang H., Donoghue P. C., Hetherington A. M., Gough J. (2016) Evolution of the Calcium-Based Intracellular Signaling System. Genome Biol Evol, 8 (7) 2118-32.

Martin O. C., Krzywicki A., Zagorski M. (2016) Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function. Phys Life Rev, 17 124-58.

Martinez-Ainsworth N. E., Tenaillon M. I. (2016) Superheroes and masterminds of plant domestication. C R Biol, 339 (7-8) 268-73.

Millet E., Welcker C., Kruijer W., Negro S., Nicolas S., Coupel-Ledru A., Bauland C., Praud S., Ranc N., Presterl T., Tuberosa R., Bedo Z., Draye X., Usadel B., Charcosset A., van Eeuwijk F., Tardieu F. (2016) Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios. Plant Physiol, 172 (2) 749-764.

Mori M., Hwa T., Martin O. C., De Martino A., Marinari E. (2016) Constrained Allocation Flux Balance Analysis. PLoS Comput Biol, 12 (6) e1004913.

Nguyen-Kim H., San Clemente H., Balliau T., Zivy M., Dunand C., Albenne C., Jamet E. (2016) Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences. Proteomics, 16 (3) 491-503.

Nicolas S. D., Peros J. P., Lacombe T., Launay A., Le Paslier M. C., Berard A., Mangin B., Valiere S., Martins F., Le Cunff L., Laucou V., Bacilieri R., Dereeper A., Chatelet P., This P., Doligez A. (2016) Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biol, 16 (1) 74.

Perronne R., Hannachi M., Lemarié S., Fugeray-Scarbel A., Goldringer I. (2016) L’évolution de la filière blé tendre en France entre 1980 et 2006: quelle influence sur la diversité cultivée ? NESE, 41 83-113.

Revilla P., Rodriguez V. M., Ordas A., Rincent R., Charcosset A., Giauffret C., Melchinger A. E., Schon C. C., Bauer E., Altmann T., Brunel D., Moreno-Gonzalez J., Campo L., Ouzunova M., Alvarez A., Ruiz de Galarreta J. I., Laborde J., Malvar R. A. (2016) Association mapping for cold tolerance in two large maize inbred panels. BMC Plant Biol, 16 (1) 127.

Roux F., Mary-Huard T., Barillot E., Wenes E., Botran L., Durand S., Villoutreix R., Martin-Magniette M. L., Camilleri C., Budar F. (2016) Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field. Proc Natl Acad Sci U S A, 113 (13) 3687-92.

Sabarly V., Aubron C., Glodt J., Balliau T., Langella O., Chevret D., Rigal O., Bourgais A., Picard B., de Vienne D., Denamur E., Bouvet O., Dillmann C. (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environ Microbiol, 18 (1) 100-17.

Solano J., Acuña I., Chauvin J.-E., Brabant P. (2016) In-Vitro Evaluation of Resistance to Late Blight (Phytophthora infestans Mont. De Bary.) in Solanum Accessions Native to Chile, by Inoculation of Detached Leaflets. American Journal of Plant Sciences, 7 (3) 581-589.

Tenaillon M. I., Manicacci D., Nicolas S. D., Tardieu F., Welcker C. (2016) Testing the link between genome size and growth rate in maize. PeerJ, 4 e2408.

Thomas M., Caillon S. (2016) Effects of farmer social status and plant biocultural value on seed circulation networks in Vanuatu. Ecol Soc, 21 (2) 13.

Violon C., Thomas M., Garine E. (2016) Good year, bad year: changing strategies, changing networks? A two-year study on seed acquisition in northern Cameroon. Ecol Soc, 21 (2) 34.

Walter S., Ali S., Kemen E., Nazari K., Bahri B. A., Enjalbert J., Hansen J. G., Brown J. K., Sicheritz-Ponten T., Jones J., de Vallavieille-Pope C., Hovmoller M. S., Justesen A. F. (2016) Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. Ecol Evol, 6 (9) 2790-804.

Wencélius J., Thomas M., Barbillon P., Garine E. (2016) Interhousehold variability and its effects on seed circulation networks: a case study from northern Cameroon. Ecol Soc, 21 (1) 44.

   

2015

16/07/18


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Angoulvant A., Stern J. B., Wittnebel S., Bourhis J. H., Gachot B., Vittecoq D., Wyplosz B. (2015) Photo quiz. Dyspnea and fever in an allogeneic stem cell recipient. Clin Infect Dis, 60 (1) 100, 157-8.

Badouin H., Hood M. E., Gouzy J., Aguileta G., Siguenza S., Perlin M. H., Cuomo C. A., Fairhead C., Branca A., Giraud T. (2015) Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae. Genetics, 200 (4) 1275-84.

Bancel E., Bonnot T., Davanture M., Branlard G., Zivy M., Martre P. (2015) Proteomic Approach to Identify Nuclear Proteins in Wheat Grain. J Proteome Res, 14 (10) 4432-9.

Barbillon P., Thomas M., Goldringer I., Hospital F., Robin S. (2015) Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network. J Theor Biol, 365 365-76.

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Boisnard S., Zhou Li Y., Arnaise S., Sequeira G., Raffoux X., Enache-Angoulvant A., Bolotin-Fukuhara M., Fairhead C. (2015) Efficient Mating-Type Switching in Candida glabrata Induces Cell Death. PLoS One, 10 (10) e0140990.

Chapeland-Leclerc F., Dilmaghani A., Ez-Zaki L., Boisnard S., Da Silva B., Gaslonde T., Poree F. H., Ruprich-Robert G. (2015) Systematic gene deletion and functional characterization of histidine kinase phosphorelay receptors (HKRs) in the human pathogenic fungus Aspergillus fumigatus. Fungal Genet Biol, 84 1-11

da Silva T., Albertin W., Dillmann C., Bely M., la Guerche S., Giraud C., Huet S., Sicard D., Masneuf-Pomarede I., de Vienne D., Marullo P. (2015) Hybridization within Saccharomyces Genus Results in Homoeostasis and Phenotypic Novelty in Winemaking Conditions. PLoS One, 10 (5) e0123834.

de Brevern A. G., Meyniel J. P., Fairhead C., Neuveglise C., Malpertuy A. (2015) Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies. Biomed Res Int, 2015 904541.

Deroin T., Damerval C., Le Guilloux M., Jabbour F. (2015) Floral vascular patterns of the double-flowered and wild-type morphs of Nigella damascena L. (Ranunculaceae). Modern Phytomorphology, 7 13-20.

Desclée de Maredsous C., Oosting A., Delteil C., Blachier F., Barbillon P., Mary-Huard T., Tome D., Oozeer R., Davila A. M. (2015) High-Protein Diet during Gestation Promotes Adiposity and Food Intake in Female Rat Pups in the Longer Term. Faseb Journal, 29 1.

Durand E., Tenaillon M. I., Raffoux X., Thepot S., Falque M., Jamin P., Bourgais A., Ressayre A., Dillmann C. (2015) Dearth of polymorphism associated with a sustained response to selection for flowering time in maize. BMC Evol Biol, 15 103.

Gaba S., Lescourret F., Boudsocq S., Enjalbert J., Hinsinger P., Journet E. P., Navas M. L., Wery J., Louarn G., Malezieux E., Pelzer E., Prudent M., Ozier-Lafontaine H. (2015) Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design. Agron Sustain Dev, 35 (2) 607-623.

Grigolon S., Sollich P., Martin O. C. (2015) Modelling the emergence of polarity patterns for the intercellular transport of auxin in plants. J R Soc Interface, 12 (106)

Guitard J., Atanasova R., Brossas J. Y., Meyer I., Gits M., Marinach C., Vellaissamy S., Angoulvant A., Mazier D., Hennequin C. (2015) Candida inconspicua and Candida norvegensis: new insights into identification in relation to sexual reproduction and genome organization. J Clin Microbiol, 53 (5) 1655-61.

Hummel M., Dobrenel T., Cordewener J. J., Davanture M., Meyer C., Smeekens S. J., Bailey-Serres J., America T. A., Hanson J. (2015) Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. J Proteomics, 128 436-49.

Jabbour F., Nadot S., Espinosa F., Damerval C. (2015) Ranunculacean flower terata: Records, a classification, and some clues about floral developmental genetics and evolution. Flora, 217 64-74.

Jabbour F., Udron M., Le Guilloux M., Goncalves B., Manicacci D., Nadot S., Damerval C. (2015) Flower development schedule and AGAMOUS-like gene expression patterns in two morphs of Nigella damascena (Ranunculaceae) differing in floral architecture. Bot J Linn Soc, 178 (4) 608-619.

Jaureguiberry S., Thellier M., Ndour P. A., Ader F., Roussel C., Sonneville R., Mayaux J., Matheron S., Angoulvant A., Wyplosz B., Rapp C., Pistone T., Lebrun-Vignes B., Kendjo E., Danis M., Houze S., Bricaire F., Mazier D., Buffet P., Caumes E. (2015) Delayed-onset hemolytic anemia in patients with travel-associated severe malaria treated with artesunate, France, 2011-2013. Emerg Infect Dis, 21 (5) 804-12.

Lanternier F., Barbati E., Meinzer U., Liu L., Pedergnana V., Migaud M., Heritier S., Chomton M., Fremond M. L., Gonzales E., Galeotti C., Romana S., Jacquemin E., Angoulvant A., Bidault V., Canioni D., Lachenaud J., Mansouri D., Mahdaviani S. A., Adimi P., Mansouri N., Jamshidi M., Bougnoux M. E., Abel L., Lortholary O., Blanche S., Casanova J. L., Picard C., Puel A. (2015) Inherited CARD9 deficiency in 2 unrelated patients with invasive Exophiala infection. J Infect Dis, 211 (8) 1241-50.

Legrand J., Temime L., Lawrence C., Herrmann J. L., Boelle P. Y., Guillemot D., Group o. b. o. t. i. S. (2015) Occupational Determinants of Methicillin-Resistant Staphylococcus aureus Colonization Among Healthcare Workers: A Longitudinal Study in a Rehabilitation Center. Infect Cont Hosp Ep, 36 (07) 767-776.

Obadia T., Silhol R., Opatowski L., Temime L., Legrand J., Thiebaut A. C., Herrmann J. L., Fleury E., Guillemot D., Boelle P. Y. (2015) Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals. PLoS Comput Biol, 11 (3) e1004170.

Osborne A. J., Pearson J., Negro S. S., Chilvers B. L., Kennedy M. A., Gemmell N. J. (2015) Heterozygote advantage at MHC DRB may influence response to infectious disease epizootics. Mol Ecol, 24 (7) 1419-32.

Oury F. X., Lasme P., Michelet C., Rousset M., Abecassis J., Lullien-Pellerin V. (2015) Relationships between wheat grain physical characteristics studied through near-isogenic lines with distinct puroindoline-b allele. Theor Appl Genet, 128 (5) 913-29.

Poncet V., Scutt C., Tournebize R., Villegente M., Cueff G., Rajjou L., Balliau T., Zivy M., Fogliani B., Job C., de Kochko A., Sarramegna-Burtet V., Job D. (2015) The Amborella vacuolar processing enzyme family. Front Plant Sci, 6 618.

Ressayre A., Glemin S., Montalent P., Serre-Giardi L., Dillmann C., Joets J. (2015) Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes. Genome Biol Evol, 7 (10) 2913-28.

Rivet-Danon D., Guitard J., Grenouillet F., Gay F., Ait-Ammar N., Angoulvant A., Marinach C., Hennequin C. (2015) Rapid diagnosis of cryptococcosis using an antigen detection immunochromatographic test. J Infect, 70 (5) 499-503.

Riviere P., Dawson J. C., Goldringer I., David O. (2015) Hierarchical Bayesian Modeling for Flexible Experiments in Decentralized Participatory Plant Breeding. Crop Sci, 55 (3) 1053-1067.

Riviere P., Goldringer I., Berthellot J. F., Galic N., Pin S., De Kochko P., Dawson J. C. (2015) Response to farmer mass selection in early generation progeny of bread wheat landrace crosses. Renew Agr Food Syst, 30 (2) 190-201.

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Samal A., Martin O. C. (2015) Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics. Phys Rev Lett, 114 (23)

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Sidhu G. K., Fang C., Olson M. A., Falque M., Martin O. C., Pawlowski W. P. (2015) Recombination patterns in maize reveal limits to crossover homeostasis. Proc Natl Acad Sci U S A, 112 (52) 15982-7.

Tayeh N., Aluome C., Falque M., Jacquin F., Klein A., Chauveau A., Berard A., Houtin H., Rond C., Kreplak J., Boucherot K., Martin C., Baranger A., Pilet-Nayel M. L., Warkentin T. D., Brunel D., Marget P., Le Paslier M. C., Aubert G., Burstin J. (2015) Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map. Plant J, 84 (6) 1257-73.

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Thomas M., Thepot S., Galic N., Jouanne-Pin S., Remoue C., Goldringer I. (2015) Diversifying mechanisms in the on-farm evolution of crop mixtures. Mol Ecol, 24 (12) 2937-54.

Zaag R., Tamby J. P., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou J. P., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette M. L., Brunaud V. (2015) GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res, 43 (Database issue) D1010-7.

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