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Publications dans des revues à comité de lecture

2013

Publications dans des revues à comité de lecture

  • Albertin, W., Marullo, P., Bely, M., Aigle, M., Bourgais, A., Langella, O., Balliau, T., Chevret, D., Valot, B., da Silva, T., Dillmann, C., de Vienne, D. , Sicard, D. (2013) Linking post-translational modifications and variation of phenotypic traits. Mol Cell Proteomics, 12 720–735.
  • Damerval, C., Citerne, H., Le Guilloux, M., Domenichini, S., Dutheil, J., Ronse de Craene, L. , Nadot, S. (2013) Asymmetric morphogenetic cues along the transverse plane: Shift from disymmetry to zygomorphy in the flower of Fumarioideae. Am J Bot, 100 391–402.
  • Dawson, J. C., Serpolay, E., Giuliano, S., Schermann, N., Galic, N., Berthellot, J. .-F., Chesneau, V., Ferté, H., Mercier, F., Osman, A., Pino, S. , Goldringer, I. (2013) Phenotypic diversity and evolution of farmer varieties of bread wheat on organic farms in Europe.Genet. Resour. Crop Evol. 60: 145-163
  • Pautasso, M., Aistara, G., Barnaud, A., Caillon, S., Clouvel, P., Coomes, O. T., Delêtre, M., Demeulenaere, E., De Santis, P., Döring, T., Eloy, L., Emperaire, L., Garine, E., Goldringer, I., Jarvis, D., Joly, H. I., Leclerc, C., Louafi, S., Martin, P., Massol, F., McGuire, S., McKey, D., Padoch, C., Soler, C., Thomas, M. , Tramontini, S. (2013) Seed exchange networks for agrobiodiversity conservation: A review. Agron. Sustain. Devel. 33:151-175
  • Radanielina, T., Ramanantsoanirina, A., Raboin, L.-M., Frouin, J., Perrier, X., Brabant, P. ,  Ahmadi, N. (2013) The original features of rice (Oryza sativa L.) genetic diversity and the importance of within-variety diversity in the highlands of Madagascar build a strong case for in situ conservation. Genet Resour Crop Ev, 60 311–323.
  • Sarilar, V., Palacios, P. M., Rousselet, A., Ridel, C., Falque, M., Eber, F., Chèvre, A.-M., Joets, J., Brabant, P. , Alix, K. (2013) Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids. New Phytol, 198 593–604.
  • Zagorski, M., Krzywicki, A. ,  Martin, O. C. (2013) Edge usage, motifs, and regulatory logic for cell cycling genetic networks. Phys Rev E Stat Nonlin Soft Matter Phys, 87 012727.
   

2012

Publications dans des revues à comité de lecture

  • Acevedo, F., Rubilar, M., Shene, C., Navarrete, P., Romero, F., Rabert, C., Jolivet, P., Valot, B. , Chardot, T. (2012) Seed oil bodies from Gevuina avellana and Madia sativa. J Agric Food Chem, 60 6994–7004.
  • Ainouche, A., Bétermier, M., Chandler, M., Cordaux, R., Cristofari, G., Deragon, J.-M., Lesage, P., Panaud, O., Quesneville, H., Vaury, C., Vieira, C. , Vitte, C. (2012) International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Mob DNA, 3 17.
  • Allard, V., Veisz, O., Kõszegi, B., Rousset, M., Le Gouis, J. , Martre, P. (2012) The quantitative response of wheat vernalization to environmental variables indicates that vernalization is not a response to cold temperature. J Exp Bot, 63 847–857.
  • Amiour, N., Imbaud, S., Clément, G., Agier, N., Zivy, M., Valot, B., Balliau, T., Armengaud, P., Quilleré, I., Cañas, R., Tercet-Laforgue, T., Hirel, B. (2012) The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. J. Exp. Bot., 63 5017–5033.
  • Arc, E., Chibani, K., Grappin, P., Jullien, M., Godin, B., Cueff, G., Valot, B., Balliau, T., Job, D. , Rajjou, L. (2012) Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release. J Proteome Res, 11 5418–5432.
  • Blein-Nicolas, M., Xu, H., de Vienne, D., Giraud, C., Huet, S. , Zivy, M. (2012) Including shared peptides for estimating protein abundances: A significant improvement for quantitative proteomics. Proteomics, 12 2797–2801.
  • Bonhomme, L., Valot, B., Tardieu, F. , Zivy, M. (2012) Phosphoproteome dynamics upon changes in plant water status reveal early events associated with rapid growth adjustment in maize leaves. Mol Cell Proteomics, 11 957–972.
  • Bonneuil, C., Goffaux, R., Bonnin, I., Montalent, P., Hamon, C., Balfourier, F. , Goldringer, I. (2012) A new integrative indicator to assess crop genetic diversity. Ecol. Indic. 23 280–289.
  • Cañas, R. A., Quilleré, I., Gallais, A. , Hirel, B. (2012) Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield? New Phytol, 194 440–452.
  • Chia, J.-M., Song, C., Bradbury, P. J., Costich, D., de Leon, N., Doebley, J., Elshire, R. J., Gaut, B., Geller, L., Glaubitz, J. C., Gore, M., Guill, K. E., Holland, J., Hufford, M. B., Lai, J., Li, M., Liu, X., Lu, Y., McCombie, R., Nelson, R., Poland, J., Prasanna, B. M., Pyhäjärvi, T., Rong, T., Sekhon, R. S., Sun, Q., Tenaillon, M. I., Tian, F., Wang, J., Xu, X., Zhang, Z., Kaeppler, S. M., Ross-Ibarra, J., McMullen, M. D., Buckler, E. S., Zhang, G., Xu, Y. , Ware, D. (2012) Maize HapMap2 identifies extant variation from a genome in flux.Nat Genet, 44 803–807.
  • Corbi, J., Dutheil, J. Y., Damerval, C., Tenaillon, M. I., Manicacci, D. (2012) Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation. Ann Bot, 109 693–708.
  • Cornille, A., Gladieux, P., Smulders, M. J. M., Roldán-Ruiz, I., Laurens, F., Le Cam, B., Nersesyan, A., Clavel, J., Olonova, M., Feugey, L., Gabrielyan, I., Zhang, X.-G., Tenaillon, M. I. , Giraud, T. (2012) New insight into the history of domesticated apple: Secondary contribution of the European wild apple to the genome of cultivated varieties. PLoS Genet, 8 e1002703.
  • Dawson, J. C., Serpolay, E., Giuliano, S., Schermann, N., Galic, N., Chable, V. , Goldringer, I. (2012) Multi-trait evolution of farmer varieties of bread wheat after cultivation in contrasting organic farming systems in Europe. Genetica, 140 1–17.
  • Desjardin, C., Balliau, T., Valot, B., Zivy, M., Wimel, L., Guérin, G., Cribiu, E. , Schibler, L. (2012) A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage. Proteomics, 12 1870–1874.
  • Durand, E., Bouchet, S., Bertin, P., Ressayre, A., Jamin, P., Charcosset, A., Dillmann, C., Tenaillon, M. I. (2012) Flowering time in maize: Linkage and epistasis at a major effect locus. Genetics, 190 1547–1562.
  • Hufford, M. B., Martínez-Meyer, E., Gaut, B. S., Eguiarte, L. E. , Tenaillon, M. I. (2012) Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight. PLoS ONE, 7 e47659.
  • Islam, N. M., Jacquemot, M.-P., Coursol, S., Ng, C. K.-Y. (2012) Sphingosine in plants--more riddles from the Sphinx? New Phytol, 193 51–57.
  • Jabbour, F., Ronse De Craene, L. P., Nadot, S. , Damerval, C. (2009) Establishment of zygomorphy on an ontogenic spiral and evolution of perianth in the tribe Delphinieae (Ranunculaceae). Ann Bot, 104 809–822.
  • Jean, N., Dumont, E., Durrieu, G., Balliau, T., Jamet, J.-L., Personnic, S. , Garnier, C. (2012) Protein expression from zooplankton communities in a metal contaminated NW mediterranean coastal ecosystem. Mar Environ Res, 80 12–26.
  • Larièpe, A., Mangin, B., Jasson, S., Combes, V., Dumas, F., Jamin, P., Lariagon, C., Jolivot, D., Madur, D., Fiévet, J., Gallais, A., Dubreuil, P., Charcosset, A., Moreau, L. (2012) The genetic basis of heterosis: Multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.). Genetics, 190 795–811.
  • Le Gouis, J., Bordes, J., Ravel, C., Heumez, E., Faure, S., Praud, S., Galic, N., Remoué, C., Balfourier, F., Allard, V. , Rousset, M. (2012) Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat. Theor Appl Genet, 124 597–611.
  • Ng, C. K.-Y., Coursol, S. (2012) New insights into phospholipase d and sphingosine kinase activation in Arabidopsis. Front Physiol, 3 67.
  • Rincent, R., Laloë, D., Nicolas, S., Altmann, T., Brunel, D., Revilla, P., Rodríguez, V. M., Moreno-Gonzalez, J., Melchinger, A., Bauer, E., Schoen, C.-C., Meyer, N., Giauffret, C., Bauland, C., Jamin, P., Laborde, J., Monod, H., Flament, P., Charcosset, A. , Moreau, L. (2012) Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: Comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics, 192 715–728.
  • Sosnowski, O., Charcosset, A. , Joets, J. (2012) BioMercator V3: An upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics, 28 2082–2083.
  • Thomas, M., Demeulenaere, E., Dawson, J. C., Khan, A. R., Galic, N., Jouanne-Pin, S., Remoue, C., Bonneuil, C. , Goldringer, I. (2012) On-farm dynamic management of genetic diversity: The impact of seed diffusions and seed saving practices on a population-variety of bread wheat. Evol. Appl. 5(8): 779-795
  • Till-Bottraud, I., Gouyon, P.-H., Ressayre, A. , Godelle, B. (2012) Gametophytic vs. sporophytic control of pollen aperture number: A generational conflict. Theor Popul Biol, 82 147–157.
  • Truntzler, M., Ranc, N., Sawkins, M. C., Nicolas, S., Manicacci, D., Lespinasse, D., Ribière, V., Galaup, P., Servant, F., Muller, C., Madur, D., Betran, J., Charcosset, A. , Moreau, L. (2012) Diversity and linkage disequilibrium features in a composite public/private dent maize panel: Consequences for association genetics as evaluated from a case study using flowering time. Theor Appl Genet, 125 731–747.
  • Vincent, D., Kohler, A., Claverol, S., Solier, E., Joets, J., Gibon, J., Lebrun, M.-H., Plomion, C., Martin, F. (2012) Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor. J Proteome Res, 11 157–171.
  • Zerjal, T., Rousselet, A., Mhiri, C., Combes, V., Madur, D., Grandbastien, M.-A., Charcosset, A., Tenaillon, M. I. (2012) Maize genetic diversity and association mapping using transposable element insertion polymorphisms. Theor Appl Genet, 124(8):1521-37
  • *Mboup, M., Bahri, B., Leconte, M., De Vallavieille-Pope, C., Kaltz, O. , Enjalbert, J. (2012) Genetic structure and local adaptation of European wheat yellow rust populations: The role of temperature-specific adaptation. Evol Appl, 5 341–352.
  • *de Vallavieille-Pope, C., Ali, S., Leconte, M., Enjalbert, J., Delos, M. , Rouzet, J. (2012) Virulence Dynamics and Regional Structuring of Puccinia striiformis f. sp tritici in France Between 1984 and 2009. Plant Dis, 96 131–140.
   

2011

  • Agrawal, G. K., Job, D., Zivy, M., Agrawal, V. P., Bradshaw, R. A., Dunn, M. J., Haynes, P. A., van Wijk, K. J., Kikuchi, S., Renaut, J., Weckwerth, W., Rakwal, R. (2011) Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). Proteomics, 11 1559–1568.
  • Albertin, W., Marullo, P., Aigle, M., Dillmann, C., de Vienne, D., Bely, M., Sicard, D. (2011) Population size drives industrial Saccharomyces cerevisiae alcoholic fermentation and is under genetic control. Appl Environ Microbiol, 77 2772–2784.
  • Bienvenut, W. V., Espagne, C., Martinez, A., Majeran, W., Valot, B., Zivy, M., Vallon, O., Adam, Z., Meinnel, T., Giglione, C. (2011) Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts. Proteomics, 11 1734–1750.
  • Corbi, J., Debieu, M., Rousselet, A., Montallent, P., Le Guilloux, M., Manicacci, D. Tenaillon, M.I.. (2011) Contrasted patterns of selection since maize domestication on duplicated genes encoding a starch pathway enzyme. Theor. Appl. Genet. 122 705–722.
  • Dawson, J. C., Rivière, P., Berthellot, J.-F., Mercier, F., Kochko, P. D., Galic, N., Pin, S., Serpolay, E., Thomas, M., Giuliano, S., Goldringer, I. (2011) Collaborative Plant Breeding for Organic Agricultural Systems in Developed Countries. Sustainability, 3 1206–1223.
  • Dumont, E., Bahrman, N., Goulas, E., Valot, B., Sellier, H., Hilbert, J.-L., Vuylsteker, C., Lejeune-Henaut, I., Delbreil, B. (2011) A proteomic approach to decipher chilling response from cold acclimation in pea (Pisum sativum L.). Plant Science, 180 86–98.
  • Enjalbert, J., Dawson, J. C., Paillard, S., Rhoné, B., Rousselle, Y., Thomas, M.,Goldringer, I. (2011) Dynamic management of crop diversity: From an experimental approach to on-farm conservation. C R Biol, 334 458–468.
  • Espinosa-Soto, C., Martin, O.C., Wagner, A. (2011) Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits. BMC Evol Biol 11, 5.
  • Gauthier, F., Martin, O.C., Falque, M. (2011) CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes. BMC Bioinformatics 12, 27.
  • Jolivet, P., Boulard, C., Bellamy, A., Valot, B., d'Andréa, S., Zivy, M., Nesi, N.,Chardot, T. (2011) Oil body proteins sequentially accumulate throughout seed development in Brassica napus. J Plant Physiol, 168 2015–2020.
  • Ligat, L., Lauber, E., Albenne, C., Clemente, H. S., Valot, B., Zivy, M., Pont-Lezica, R., Arlat, M., Jamet, E. (2011) Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins. Proteomics, 11 1798–1813.
  • Manaa, A., Ben Ahmed, H., Valot, B., Bouchet, J.-P., Aschi-Smiti, S., Causse, M., Faurobert, M. (2011) Salt and genotype impact on plant physiology and root proteome variations in tomato. J Exp Bot, 62(8) 2797–2813.
  • Rousselle, Y., Thomas, M., Galic, N., Bonnin, I., Goldringer, I. (2011) Inbreeding depression and low between-population heterosis in recently diverged experimental populations of a selfing species. Heredity, 106 289–299.
  • Rousset, M., Bonnin, I., Remoué, C., Falque, M., Rhoné, B., Veyrieras, J.-B., Madur, D., Murigneux, A., Balfourier, F., Le Gouis, J., Santoni, S., Goldringer, I. (2011) Deciphering the genetics of flowering time by an association study on candidate genes in bread wheat (Triticum aestivum L.). Theor Appl Genet, 123 907–926.
  • Sabarly, V., Bouvet, O., Glodt, J., Clermont, O., Skurnik, D., Diancourt, L., de Vienne, D., Denamur, E., Dillmann, C. (2011) The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity. J Evol Biol, 24 1559–1571.
  • Sarilar V., Marmagne A., Brabant P., Joets J., Alix K. (2011) ‘BraSto’, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in gene space. Plant Mol Biol , 77(1-2):59-75
  • Serpolay, E., Dawson, J., Chable, V., Van Bueren, E., Osman, A., Pino, S., Silveri, D., Goldringer, I. (2011) Diversity of different farmer and modern wheat varieties cultivated in contrasting organic farming conditions in western Europe and implications for European seed and variety legislation. Organic Agriculture, 1 127–145.
  • Serpolay, E., Schermann, N., Dawson, J., van Bueren, E. L. T., Goldringer, I.,Chable, V. (2011) Phenotypic Changes in Different Spinach Varieties Grown and Selected under Organic Conditions. Sustainability, 3 1616–1636.
  • Thomas, M., Dawson, J. C., Goldringer, I. Bonneuil, C. (2011) Seed exchanges, a key to analyze crop diversity dynamics in farmer-led on-farm conservation. Genet. Resour. Crop Evol. 58 321–338.
  • Valot, B., Langella, O., Nano, E., Zivy, M. (2011) MassChroQ: A versatile tool for mass spectrometry quantification. Proteomics, 11 3572–3577.
  • Virlouvet, L., Jacquemot, M.-P., Gerentes, D., Corti, H., Bouton, S., Gilard, F., Valot, B., Trouverie, J., Tcherkez, G., Falque, M., Damerval, C., Rogowsky, P., Perez, P., Noctor, G., Zivy, M.,Coursol, S. (2011) The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions. Plant Physiol, 157 917–936.
  • Wang, S., Spor, A., Nidelet, T., Montalent, P., Dillmann, C., de Vienne, D., Sicard, D. (2011) Switch between life history strategies due to changes in glycolytic enzyme gene dosage in Saccharomyces cerevisiae. Appl Environ Microbiol 77, 452-459.
  • Zhang, Y., Giboulot, A., Zivy, M., Valot, B., Jamet, E., Albenne, C. (2011) Combining various strategies to increase the coverage of the plant cell wall glycoproteome. Phytochemistry, 72(10) 1109–1123.
   

2010

  • Albert, B., Nadot, S., Dreyer, L., Ressayre, A. (2010) The influence of tetrad shape and intersporal callose wall formation on pollen aperture pattern ontogeny in two eudicot species. Ann Bot, 106 557–564.
  • Barriere, Y., Charcosset, A., Denoue, D., Madur, D., Bauland, C., Laborde, J. (2010) Genetic variation for lignin content and cell wall digestibility in early maize lines derived from ancient landraces. Maydica, 55 65–74.
  • Barriere, Y., Mechin, V., Denoue, D., Bauland, C., Laborde, J. (2010) QTL for Yield, Earliness, and Cell Wall Quality Traits in Topcross Experiments of the F838 x F286 Early Maize RIL Progeny. Crop Science, 50 1761–1772.
  • Bourrellier, A. B. F., Valot, B., Guillot, A., Ambard-Bretteville, F., Vidal, J., Hodges, M. (2010) Chloroplast acetyl-CoA carboxylase activity is 2-oxoglutarate-regulated by interaction of PII with the biotin carboxyl carrier subunit. Proc. Natl. Acad. Sci. U. S. A. 107 502–507.
  • Burda, Z., Krzywicki, A., Martin, O. C.,Zagorski, M. (2010) Distribution of essential interactions in model gene regulatory networks under mutation-selection balance. Phys Rev E Stat Nonlin Soft Matter Phys, 82 011908.
  • Capelle, V., Remoue, C., Moreau, L., Reyss, A., Mahe, A., Massonneau, A., Falque, M., Charcosset, A., Thevenot, C., Rogowsky, P., Coursol, S., Prioul, J.-L. (2010) QTLs and candidate genes for desiccation and abscisic acid content in maize kernels. BMC Plant Biol, 10 2. doi: 10.1186/1471-2229-10-2.
  • Cassan, L., Moreau, L., Segouin, S., Bellamy, A., Falque, M.,Limami, A. M. (2010) Genetic map construction and quantitative trait loci (QTL) mapping for nitrogen use efficiency and its relationship with productivity and quality of the biennial crop Belgian endive (Cichorium intybus L.). J Plant Physiol, 167 1253–1263.
  • Citerne, H., Jabbour, F., Nadot, S.,Damerval, C. (2010) The Evolution of Floral Symmetry. Adv. Bot. Res. 54 85–137.
  • Chen, N. W. G., Sévignac, M., Thareau, V., Magdelenat, G., David, P., Ashfield, T., Innes, R. W.,Geffroy, V. (2010) Specific resistances against Pseudomonas syringae effectors AvrB and AvrRpm1 have evolved differently in common bean (Phaseolus vulgaris), soybean (Glycine max), and Arabidopsis thaliana. New Phytol, 187 941–956.
  • Crozet, P., Jammes, F., Valot, B., Ambard-Bretteville, F., Nessler, S., Hodges, M., Vidal, J., Thomas, M. (2010) Cross-phosphorylation between Arabidopsis thaliana sucrose nonfermenting 1-related protein kinase 1 (AtSnRK1) and its activating kinase (AtSnAK) determines their catalytic activities. J Biol Chem, 285 12071–12077.
  • Daher, Z., Recorbet, G., Valot, B., Robert, F., Balliau, T., Potin, S., Schoefs, B.,Dumas-Gaudot, E. (2010) Proteomic analysis of Medicago truncatula root plastids. Proteomics, 10 2123–2137.
  • David, P., Colas des Francs, C., Sévignac, M., Thareau, V., Macadré, C., Langin, T.,Geffroy, V. (2010) Three highly similar formate dehydrogenase genes located in the vicinity of the B4 resistance gene cluster are differentially expressed under biotic and abiotic stresses in Phaseolus vulgaris. Theor Appl Genet, 121 87–103.
  • Durand, E., Tenaillon, M. I., Ridel, C., Coubriche, D., Jamin, P., Jouanne, S., Ressayre, A., Charcosset, A., Dillmann, C. (2010) Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds. BMC Evol Biol, 10 2. doi:10.1186/1471-2148-10-2
  • Fiévet, J. B., Dillmann, C., de Vienne, D. (2010). Systemic properties of metabolic networks lead to an epistasis-based model for heterosis. Theor Appl Genet, 120(2), 463–473.
  • Fonsêca, A., Ferreira, J., dos Santos, T. R. B., Mosiolek, M., Bellucci, E., Kami, J., Gepts, P., Geffroy, V., Schweizer, D., dos Santos, K. G. B.,Pedrosa-Harand, A. (2010) Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosome Res, 18 487–502.
  • Hoogland, C., O'Gorman, M., Bogard, P., Gibson, F., Berth, M., Cockell, S., Ekefjärd, A., Forsstrom-Olsson, O., Kapferer, A., Nilsson, M., Martínez-Bartolomé, S., Albar, J., Echevarría-Zomeño, S., Joets, J., Binz, P.-A., Taylor, C. , Dowsey, A. (2010) Guidelines for reporting the use of gel image informatics in proteomics. Nature Biotech.28(7):655-6.
  • Huang, Y.-F., Madur, D., Combes, V., Ky, C. L., Coubriche, D., Jamin, P., Jouanne, S., Dumas, F., Bouty, E., Bertin, P., Charcosset, A.,Moreau, L. (2010) The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations. Genetics, 186 395–404.
  • Junier, I., Martin, O., Képès, F. (2010) Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization. PLoS Comput Biol, 6 e1000678.
  • Levert, M., Zamfir, O., Clermont, O., Bouvet, O., Lespinats, S., Hipeaux, M. C., Branger, C., Picard, B., Saint-Ruf, C., Norel, F., Balliau, T., Zivy, M., Le Nagard, H., Cruvellier, S., Chane-Woon-Ming, B., Nilsson, S., Gudelj, I., Phan, K., Ferenci, T., Tenaillon, O.,Denamur, E. (2010) Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections. PLoS Pathog, 6 e1001125.
  • Marmagne, A., Brabant, P., Thiellement, H. , Alix, K. (2010) Analysis of gene expression in resynthesized Brassica napus allotetraploids: Transcriptional changes do not explain differential protein regulation. New Phytol, 186 216–227.
  • Montalent, P., Joets, J. (2010) EuGène-maize: A web site for maize gene prediction. Bioinformatics, 26 1254–1255.
  • Page, D., Gouble, B., Valot, B., Bouchet, J. P., Callot, C., Kretzschmar, A., Causse, M., Renard, C. M. C. G.,Faurobert, M. (2010) Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage. Planta, 232 483–500.
  • Parisod, C., Alix, K., Just, J., Petit, M., Sarilar, V., Mhiri, C., Ainouche, M., Chalhoub, B., Grandbastien, M.-A. (2010) Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytol, 186 37–45
  • Recorbet, G., Valot, B., Robert, F., Gianinazzi-Pearson, V.,Dumas-Gaudot, E. (2010) Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species. Fungal Genet Biol, 47 608–618.
  • Rhoné, B., Vitalis, R., Goldringer, I., Bonnin, I. (2010) Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection. Evolution, 4-7: 2110--2125.
  • Samal, A., Rodrigues, J. M. F., Jost, J., Martin, O. C.,Wagner, A. (2010) Genotype networks in metabolic reaction spaces. BMC Syst Biol, 4 30.
  • Santure, A. W., Ewen, J. G., Sicard, D., Roff, D. A., Moller, A. P. (2010) Population structure in the barn swallow, Hirundo rustica: A comparison between neutral DNA markers and quantitative traits. Biol J Linn Soc Lond, 99 306–314.
  • Sirichandra, C., Davanture, M., Turk, B. E., Zivy, M., Valot, B., Leung, J.,Merlot, S. (2010) The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover. PLoS ONE, 5. e13935
  • Spor, A., Dillmann, C., Wang, S., de Vienne, D., Sicard, D., Parent, E. (2010) Hierarchical Bayesian Modelling for Saccharomyces cerevisiae population dynamics. Int J Food Microbiol 142, 25-35.
  • Storlazzi, A., Gargano, S., Ruprich-Robert, G., Falque, M., David, M., Kleckner, N., Zickler, D. (2010) Recombination Proteins Mediate Meiotic Spatial Chromosome Organization and Pairing. Cell, 141 94–106.
  • Sulc, P., Wagner, A.,Martin, O. C. (2010) Quantifying slow evolutionary dynamics in RNA fitness landscapes. J Bioinform Comput Biol, 8 1027–1040.
  • Tenaillon, M. I., Hollister, J. D., Gaut, B. S. (2010) A triptych of the evolution of plant transposable elements. Trends Plant Sci, 15 471–478.
  • Truntzler, M., Barrière, Y., Sawkins, M. C., Lespinasse, D., Betran, J., Charcosset, A.,Moreau, L. (2010) Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes. Theor Appl Genet, 121(8) 1465-1482
  • Vlad, F., Droillard, M.-J., Valot, B., Khafif, M., Rodrigues, A., Brault, M., Zivy, M., Rodriguez, P. L., Merlot, S. & Laurière, C. (2010) Phospho-site mapping, genetic and in planta activation studies reveal key aspects of the different phosphorylation mechanisms involved in activation of SnRK2s. Plant J, 65(5) 778-790
   

2009

  • Albert, B., Gouyon, P.-H., Ressayre, A. (2009) Microsporogenesis variation in Codiaeum producing inaperturate pollen grain. C R Biol, 332 507–516.
  • Albertin, W., Langella, O., Joets, J., Négroni, L., Zivy, M., Damerval, C., Thiellement, H. (2009) Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus. Proteomics, 9 793–799.
  • Albertin, W., Marullo, P., Aigle, M., Bourgais, A., Bely, M., Dillmann, C., de Vienne, D., Sicard, D. (2009) Evidence for autotetraploidy associated with reproductive isolation in Saccharomyces cerevisiae: Towards a new domesticated species. J Evol Biol, 22 2157-2170.
  • Aloui, A., Recorbet, G., Gollotte, A., Robert, F., Valot, B., Gianinazzi-Pearson, V., Aschi-Smiti, S., Dumas-Gaudot, E. (2009) On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study. Proteomics, 9 420–433.
  • Barre, P., Moreau, L., Mi, F., Turner, L., Gastal, F., Julier, B.,Ghesquiere, M. (2009) Quantitative trait loci for leaf length in perennial ryegrass (Lolium perenne L.). Grass and Forage Science, 64 310–321.
  • Ducrocq, S., Giauffret, C., Madur, D., Combes, V., Dumas, F., Jouanne, S., Coubriche, D., Jamin, P., Moreau, L.,Charcosset, A. (2009) Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10. Genetics, 183 1555–1563.
  • Edelist, C., Raffoux, X., Falque, M., Dillmann, C., Sicard, D., Rieseberg, L. H., Karrenberg, S. (2009) Differential expression of candidate salt-tolerance genes in the halophyte Helianthus paradoxus and its glycophyte progenitors H. annuus and H. petiolaris (Asteraceae). Am. J. Bot. 96 1830–1838.
  • Falque, M., Anderson, L. K., Stack, S. M., Gauthier, F.,Martin, O. C. (2009) Two Types of Meiotic Crossovers Coexist in Maize. Plant Cell, 21(12) 3915–3925.
  • Gallais, A. (2009) Full-Sib Reciprocal Recurrent Selection with the Use of Doubled Haploids. Crop Science, 49 150–152.
  • Jabbour, F., Nadot, S., Damerval, C. (2009) Evolution of floral symmetry: A state of the art. C R Biol, 332 219–231.
  • Jannink, J.-L., Moreau, L., Charmet, G.,Charcosset, A. (2009) Overview of QTL detection in plants and tests for synergistic epistatic interactions. Genetica, 136 225–236.
  • Johannes, F., Porcher, E., Teixeira, F. K., Saliba-Colombani, V., Simon, M., Agier, N., Bulski, A., Albuisson, J., Heredia, F., Audigier, P., Bouchez, D., Dillmann, C., Guerche, P., Hospital, F., Colot, V. (2009) Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet, 5 e1000530.
  • Legrand, D., Tenaillon, M. I., Matyot, P., Gerlach, J., Lachaise, D.,Cariou, M.-L. (2009) Species-wide Genetic Variation and Demographic History of Drosophila sechellia, a Species Lacking Population Structure. Genetics, 182 1197–1206.
  • Manicacci, D., Camus-Kulandaivelu, L., Fourmann, M., Arar, C., Barrault, S., Rousselet, A., Feminias, N., Consoli, L., Francès, L., Méchin, V., Murigneux, A., Prioul, J.-L., Charcosset, A., Damerval, C. (2009) Epistatic Interactions between Opaque2 Transcriptional Activator and Its Target Gene CyPPDK1 Control Kernel Trait Variation in Maize. Plant Physiol, 150 506–520.
  • Martin, O. C.,Wagner, A. (2009) Effects of recombination on complex regulatory circuits. Genetics, 183 673–84, 1SI-8S.
  • Marullo, P., Mansour, C., Dufour, M., Albertin, W., Sicard, D., Bely, M., Dubourdieu, D. (2009) Genetic improvement of thermo-tolerance in wine Saccharomyces cerevisiae strains by a backcross approach. FEMS Yeast Res 9, 1148-1160.
  • Ostergard, H., Finckh, M. R., Fontaine, L., Goldringer, I., Hoad, S. P., Kristensen, K., van Bueren, E. L. T., Mascher, F., Munk, L.,Wolfe, M. S. (2009) Time for a shift in crop production: Embracing complexity through diversity at all levels. J Sci Food Agr, 89 1439–1445.
  • Ross-Ibarra, J., Tenaillon, M., Gaut, B. S. (2009) Historical divergence and gene flow in the genus Zea. Genetics, 181 1399–1413.
  • Saintenac, C., Falque, M., Martin, O. C., Paux, E., Feuillet, C., Sourdille, P. (2009) Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics, 181 393–403.
  • Sirichandra, C., Gu, D., Hu, H.-C., Davanture, M., Lee, S., Djaoui, M., Valot, B., Zivy, M., Leung, J., Merlot, S., Kwak, J. M. (2009) Phosphorylation of the Arabidopsis AtrbohF NADPH oxidase by OST1 protein kinase. FEBS Lett, 583 2982–2986.
  • Spor, A., Nidelet, T., Simon, J., Bourgais, A., de Vienne, D.,Sicard, D. (2009) Niche-driven evolution of metabolic and life-history strategies in natural and domesticated populations of Saccharomyces cerevisiae. BMC Evol Biol, 9 296.
  • Vincent, D., Balesdent, M.-H., Gibon, J., Claverol, S., Lapaillerie, D., Lomenech, A.-M., Blaise, F., Rouxel, T., Martin, F., Bonneu, M., Amselem, J., Dominguez, V., Howlett, B. J., Wincker, P., Joets, J., Lebrun, M.-H.,Plomion, C. (2009) Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE. Electrophoresis, 30 4118–4136.
  • Zerjal, T., Joets, J., Alix, K., Grandbastien, M.-A.,Tenaillon, M. I. (2009) Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome. Plant Mol Biol, 71 99–114.
   

2008

  • Alix, K., Joets, J., Ryder, C. D., Moore, J., Barker, G. C., Bailey, J. P., King, G. J.,Heslop-Harrison, J. P. S. (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant J, 56 1030–1044.
  • Blanc,G. Charcosset,A. Veyrieras,J B. Gallais,A. Moreau,L. 2008. Marker-assisted selection efficiency in multiple connected populations: a simulation study based on the results of a QTL detection experiment in maize Euphytica 161 : 71-84.
  • Bonnin,I. Rousset,M. Madur,D. Sourdille,Pierre. Dupuits,C. Brunel,D. Goldringer,I. 2008. FT genome A and D polymorphisms are associated with the variation of earliness components in hexaploid wheat. Theor Appl Genet 116 : 383-394.
  • Camus-Kulandaivelu,L. Chevin,L M. Tollon-Cordet,C. Charcosset,A. Manicacci,D. Tenaillon,M I. 2008. Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics 180 : 1107-1121.
  • Coque,M. Martin,A. Veyrieras,J B. Hirel,B. Gallais,A. 2008. Genetic variation for N-remobilization and postsilking N-uptake in a set of maize recombinant inbred lines. 3. QTL detection and coincidences. Theor Appl Genet 117(5) : 729-747.
  • Ducrocq,S. Madur,D. Veyrieras,J B. Camus-Kulandaivelu,L. Kloiber-Maitz,M. Presterl,T. Ouzunova,M. Manicacci,D. Charcosset,A. 2008. Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics 178 : 2433-2437.
  • Ducruix, C., Vailhen, D., Werner, E., Fiévet, J. B., Bourguignon, J., Tabet, J.-C., Ezan, E.,Junot, C. (2008) Metabolomic investigation of the response of the model plant Arabidopsis thaliana to cadmium exposure: Evaluation of data pretreatment methods for further statistical analyses. Chemometr Intell Lab Syst, 91 67–77.
  • Gallais,A. Carle,J. Simplot-Ryl,D. Stojmenovic,I. 2008. Localized sensor area coverage with low communication overhead Ieee Transactions On Mobile Computing 7 : 661-672.
  • Garcia-Verdugo,I. Synguelakis,Monique. Degrouard,J. Franco,C A. Valot,B. Zivy,M. Chaby,R. Tanfin,Z. 2008. Interaction of surfactant protein A with the intermediate filaments desmin and vimentin. Biochemistry 47 : 5127-5138.
  • Jabbour,F. Damerval,C. Nadot,S. 2008. Evolutionary Trends in the Flowers of Asteridae: Is Polyandry an Alternative to Zygomorphy? Ann Bot (Lond) 102(2) : 153-165.
  • Jorg,T. Martin,O. Wagner,A. 2008. Neutral network sizes of biological RNA molecules can be computed and are not atypically small. BMC Bioinformatics 9 : 464.
  • Kuang,H H. van Eck,H J. Sicard,D. Michelmore,R. Nevo,E. 2008. Evolution and genetic population structure of prickly lettuce (Lactuca serriola) and its RGC2 resistance gene cluster Genetics 178 : 1547-1558.
  • Langella, O.,Zivy, M. (2008) A method based on bead flows for spot detection on 2-D gel images. Proteomics, 8 4914–4918.
  • Martin,O C. Wagner,A. 2008. Multifunctionality and robustness trade-offs in model genetic circuits Biophysical Journal 94 : 2927-2937.
  • Pouilly, N., Delourme, R., Alix, K.,Jenczewski, E. (2008) Repetitive sequence-derived markers tag centromeres and telomeres and provide insights into chromosome evolution in Brassica napus. Chromosome Res, 16 683–700.
  • Raquin,A L. Brabant,P. Rhone,B. Balfourier,F. Leroy,P. Goldringer,I. 2008. Soft selective sweep near a gene that increases plant height in wheat Molecular Ecology 17 : 741-756.
  • Raquin, A.-L., Depaulis, F., Lambert, A., Galic, N., Brabant, P.,Goldringer, I. (2008) Experimental estimation of mutation rates in a wheat population with a gene genealogy approach. Genetics, 179 2195–2211.
  • Rhone,B. Remoué,C. Galic,N. Goldringer,I. Bonnin,I. 2008. Insight into the genetic bases of climatic adaptation in experimentally evolving wheat populations. Mol Ecol 17 : 930-943.
  • Siol,M. Prosperi,J M. Bonnin,I. Ronfort,J. 2008. How multilocus genotypic pattern helps to understand the history of selfing populations: a case study in Medicago truncatula. Heredity 100 : 517-525.
  • Spor,A. Wang,S. Dillmann,C. de Vienne,D. Sicard,D. 2008. "Ant" and "grasshopper" life-history strategies in Saccharomyces cerevisiae. PLoS ONE 3 : e1579.
  • Tenaillon,M I. Austerlitz,F. Tenaillon,O. 2008. Apparent mutational hotspots and long distance linkage disequilibrium resulting from a bottleneck Journal Of Evolutionary Biology 21 : 541-550.
  • Tenaillon,M I. Tiffin,P L. 2008. The quest for adaptive evolution: a theoretical challenge in a maze of data Current Opinion In Plant Biology 11 : 110-115.
  • Thuillet,A C. Tenaillon,M I. Falque,M. Mitchell,S E. Kresovich,S. Stack,S M. Gaut,B. Doebley,J. 2008. A weak effect of background selection on trinucleotide microsatellites in maize Journal Of Heredity 99 : 45-55.
  • Wolfe, M. S., Baresel, J. P., Desclaux, D., Goldringer, I., Hoad, S., Kovacs, G., Loeschenberger, F., Miedaner, T., Ostergard, H.,van Bueren, L. E. T. (2008) Developments in breeding cereals for organic agriculture. Euphytica, 163 323–346.
  • Xiong,T C. Coursol,S. Grat,S. Ranjeva,R. Mazars,C. 2008. Sphingolipid metabolites selectively elicit increases in nuclear calcium concentration in cell suspension cultures and in isolated nuclei of tobacco. Cell Calcium 43 : 29-37.
   

2007

  • Albertin W, Alix K, Balliau T, Brabant P, Davanture M, Malosse C, Valot B & Thiellement H. (2007). Differential regulation of gene products in newly synthesized Brassica napus allotetraploids is not related to gene function nor subcellular localization . BMC Genomics 8 : 56
  • Alix K., Lariagon C., Delourme R. and Manzanares-Dauleux M. (2007). Exploiting natural genetic diversity and mutant resources of Arabidopsis thaliana to study the A. thaliana - Plasmodiophora brassicae interaction. Plant Breeding 126: 218-221.
  • Camus-Kulandaivelu, L., J.B. Veyrieras, B. Gouesnard, A. Charcosset, and D. Manicacci. 2007. Evaluating the reliability of STRUCTURE outputs in case of relatedness between individuals. Crop Sci 47:885-890
  • Ciliberti S. , Martin O.C. and Wagner A. (2007) Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology, PLoS Comput Biol 3(2): e15.
  • CilibertiS. , Martin O.C. and Wagner A. (2007) Innovation and robustness in complex regulatory gene networks, PNAS 104(34):13591-6.
  • Damerval C, Le Guilloux M, Jager M, Charon C. (2007). Diversity and evolution of CYCLOIDEA-Like TCP genes in relation to flower development in Papaveraceae. Plant Physiol. 143: 759-72.
  • Damerval C et Nadot S. (2007). Evolution of perianth and stamen characteristics with respect to floral symmetry in Ranunculales. /Ann. Bot./doi: 10.1093/aob/mcm041
  • Drouaud, J., Mercier, R, Chelysheva, L., Bérard, A., Falque, M., Martin, O., Zanni, V., Brunel, D., and C. Mézard. (2007). Sex-specific crossover distribution and variations in interference level along Arabidopsis thaliana chromosome 4. PLoS Genet 3(6): e106
  • Espagne, C., Martinez, A., Valot, B., Meinnel, T.,Giglione, C. (2007) Alternative and effective proteomic analysis in Arabidopsis. Proteomics, 7 3788–3799.
  • Falque, M., Mercier, R., Mézard, C., de Vienne, D., and O.C. Martin. (2007). Patterns of recombination rate along chromosomes : importance of interference and obligate chiasma, Genetics 176: 1453-1467.
  • Faurobert, M., Mihr, C., Bertin, N., Pawlowski, T., Négroni, L., Sommerer, N.,Causse, M. (2007) Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol, 143 1327–1346.
  • Gallais, A.,Bordes, J. (2007) The use of doubled haploids in recurrent selection and hybrid development in maize. Crop Science, 47 S190–S201.
  • Gallais, A., Coque, M., Le Gouis, J., Prioul, J.-L., Hirel, B.,Quillere, I. (2007) Estimating the proportion of nitrogen remobilization and of postsilking nitrogen uptake allocated to maize kernels by nitrogen-15 labeling. Crop Science, 47 685–693.
  • Gallais A., Moreau L., Charcosset A. (2007) Detection of marker-QTL associations by studying change in marker frequencies with selective genotyping. Theor Appl Genet, 114 (4): 669-681
  • Hirel, B., Gouis, J. L., Ney, B.,Gallais, A. (2007) The challenge of improving nitrogen use efficiency in crop plants: Towards a more central role for genetic variability and quantitative genetics within integrated approaches. J Exp Bot, 58 2369–2387.
  • Langella, O., Zivy, M.,Joets, J. (2007) The PROTICdb database for 2-DE proteomics. Methods Mol Biol, 355 279–303.
  • Liu, R., Vitte, C., Ma, J., Mahama, A. A., Dhliwayo, T., Lee, M.,Bennetzen, J. (2007) A GeneTrek analysis of the maize genome. Proc Natl Acad Sci U S A, 104 11844–11849.
  • Manicacci, D., Falque, M., Le Guillou, S., Piégu, B., Henry, A.M., Le Guillou, M., Damerval, C. & D. de Vienne (2007). Maize Sh2 gene is constrained by natural selection but escaped domestication. Journal of Evolutionary Biology 20 (2), 503–516.
  • Méchin V., Thévenot C., Le Guilloux M., Prioul J.L. and Damerval C. 2007. Developmental analysis of maize endosperm proteome suggests a pivotal role for PPDK in starch/protein balance. Plant Physiol. 143: 1203-1219.
  • Meimoun, P., Ambard-Bretteville, F., Francs-Small, C.-D. C., Valot, B.,Vidal, J. (2007) Analysis of plant phosphoproteins. Anal Biochem, 371 238–246.
  • Minic, Z., Jamet, E., Négroni, L., der Garabedian, A. P., Zivy, M.,Jouanin, L. (2007) A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases. J Exp Bot, 58 2503–2512.
  • Moeller A., Tenaillon M.I. and Tiffin P. 2007. Population structure and its effects on patterns of nucleotide polymorphism in teosinte (Zea mays ssp. parviglumis). Genetics 176: 1799-1809.
  • Rhoné B., Raquin AL., Goldringer I. (2007) Strong linkage disequilibrium near the selected Yr17 resistance gene in a wheat population under dynamic management. Theor. Appl. Genet. 114:787–802
  • Sicard, D., Pennings, P.S., Grandclément, C., Acosta, J., Kaltz, O. and Shykoff, J. A. (2007). Specialization and local adaptation of a fungal parasite on two host species as revealed by two fitness traits. Evolution 61, 27-41.
  • Siol M., Bonnin I., Olivieri I., Prosperi J.M. and Ronfort J. (2007). Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the selfing annual Medicago truncatula. Journal of Evolutionary Biology 20: 2349-2360.
  • Sumedha, Martin O.C. and Wagner A. (2007), New structural variation in evolutionary searches of RNA neutral networks,BioSystems 90: 475-485.
  • Sumedha, Martin O.C. and Peliti L. (2007) Population size effects in evolutionary dynamics on neutral networks and toy landscapes, J. Stat. Mech. P05011.
  • Thuillet A-C., Tenaillon M.I., Anderson L.K., Mitchell S.E., Kresovich S., Stack S.M., Gaut B.S. and Doebley J (2007). A weak effect of background selection on trinucleotide microsatellites in maize. Journal of Heredity. 99(1): 45-55
  • Veyrieras, J.B., Goffinet B., and Charcosset A. (2007) MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments. BMC Bioinformatics 8(1):49.
  • Veyrieras, J.-B., Camus-Kulandaivelu, L., Gouesnard, B., Manicacci, D.,Charcosset, A. (2007) Bridging genomics and genetic diversity: Linkage disequilibrium structure and association mapping in maize and other cereals. Crop Science, 47 S60–S71.
  • Vincent, D., Ergul, A., Bohlman, M. C., Tattersall, E. A. R., Tillett, R. L., Wheatley, M. D., Woolsey, R., Quilici, D. R., Joets, J., Schlauch, K., Schooley, D. A., Cushman, J. C.,Cramer, G. R. (2007) Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity. J. Exp. Bot, 58 1873–1892.
  • Vitte, C., Chaparro, C., Quesneville, H.,Panaud, O. (2007) Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8. Plant Science, 172 8–19.
  • Vitte, C., Panaud, O.,Quesneville, H. (2007) LTR retrotransposons in rice (Oryza sativa, L.): Recent burst amplifications followed by rapid DNA loss. BMC Genomics, 8 218.
   

2006

  • Athenstaedt, K., Jolivet, P., Boulard, C., Zivy, M., Négroni, L., Nicaud, J.-M.,Chardot, T. (2006) Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source. Proteomics, 6 1450–1459.
  • Albertin W., Balliau T., Brabant P., Chèvre A.-M., Eber F., Malosse C. & Thiellement H. (2006). Numerous and Rapid Nonstochastic Modifications of Gene Products in Newly Synthesized Brassica napus Allotetraploids. Genetics 173, 1101- 1113.
  • Bernardo R., Charcosset A. (2006) Usefulness of Gene Information in Marker-Assisted Recurrent Selection: A Simulation Appraisal. Crop Science 46:614-621
  • Bernardo, R., L. Moreau, and A. Charcosset. (2006) Number and Fitness of Selected Individuals in Marker-Assisted and Phenotypic Recurrent Selection. Crop Sci 46:1972-1980.
  • Blanc, G., Charcosset A., Mangin B., Gallais A., Moreau L. (2006) Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize. Theoretical and Applied Genetics 113:206-224.
  • Bordes, J., Charmet, G., Dumas de Vaulx, R., Pollacsek, M., Beckert, M., Gallais, A. (2006). Doubled haploid versus S1 family recurrent selection for testcross performance in a maize population. Theor. Appl. Genet. 112, 1063-1072.
  • Camus-kulandaivelu, L., Veyrieras, J.-B., Madur, D., Combes, L., Fourmann, M., Barraud, S., Dubreuil, P., Gouesnard, B., Manicacci, D., Charcosset, A. (2006). Maize Adaptation to Temperate Climate: Relationship Between Population Structure and Polymorphism in the Dwarf8 Gene. Genetics 172, 2449-2463.
  • Coque, M., Bertin, P., Hirel, B., Gallais, A. (2006). Genetic variation and QTLs for 15N natural abundance in a set of maize recombinant inbred lines. Field crops Res. 97, 310-321.
  • Coque, M., Gallais, A. (2006). Genomic regions involved in response to grain yield selection at high and low nitrogen fertilization in maize. Theor. Appl. Genet. 112, 1205-1220.
  • Diaz, U., Saliba-Colombani, V., Loudet, O., Belluomo, P., Moreau, L., Daniel-Vedele, F., Morot-Gaudry, J. F.,Maselaux-Daubresse, U. (2006) Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana. Plant And Cell Physiology, 47 74–83.
  • Dowd, P. E., Coursol, S., Skirpan, A., Kao, T.-H.,Gilroy, S. (2006) Petunia phospholipase c1 is involved in pollen tube growth. Plant Cell, 18 1438–1453.
  • Dubreuil P., Warburton M., Chastanet M., Hoisington D., Charcosset A. (2006) More on the introduction of temperate maize into Europe: large-scale bulk SSR genotyping and new historical elements Maydica 51:281-291 Don Duvick issue, soumis sur invitation
  • Edelist, C., Lexer, C., Dillmann, C., Sicard, D. and Rieseberg, L.H. (2006). Microsatellite signature of ecological selection for salt tolerance in a wild sunflower hybrid species, Helianthus paradoxus. Mol. Ecol. 15, 4623-4634.
  • Fiévet, J., Dillman, C., Curien, G., de Vienne, D. (2006). Simplified modelling of metabolic pathways for flux prediction and optimization: lessons from an in vitro reconstruction of the upper part of glycolysis. Biochem. J. 396, 317-326.
  • Gallais, A., Coque, M., Quillère, I., Prioul, J.-L., Hirel, B. (2006). Modelling postsilking nitrogen fluxes in maize (Zea mays) using 15N-labelling field experiments. New Phytol. 172-4, 696-707.
  • Goldringer, I., Prouin, C., Rousset, M., Galic, N., Bonnin, I. (2006). Rapid Differentiation of Experimental Populations of Wheat for Heading Time in Response to Local Climatic Conditions. Ann. Bot. London 98, 805-817.
  • Hirel, B., Gallais, A. (2006). Rubisco synthesis, turnover and degradation: some new thoughts on an old problem. New Phytol. 169, 445-448.
  • Jahier, J., Chalhoub, B.,Charcosset, A. (2006) The domestification of plants: From the gather to post-genomics. Biofutur, 28–33.
  • Karrenberg, S., Edelist, C., Lexer, C.,Rieseberg, L. (2006) Response to salinity in the homoploid hybrid species Helianthus paradoxus and its progenitors H-annuus and H-petiolaris. New Phytologist, 170 615–629.
  • Loywyck, V., Pinard-Van der laan, M. E., Goldringer, I., Verrier, E. (2006). On the need for combining complementary analyses to assess the effect of a candidate gene and the evolution of its polymorphism: the example of the major histocompatibility complex in chicken. Genet. Res. 87, 125-131.
  • Martin, A., J. Lee, T. Kichey, D. Gerentes, M. Zivy, C. Tatout, F. Dubois, T. Balliau, B. Valot, M. Davanture, T. Terce-Laforgue, I. Quillere, M. Coque, A. Gallais, M.B. Gonzalez-Moro, L. Bethencourt, D.Z. Habash, P.J. Lea, A. Charcosset, P. Perez, A. Murigneux, H. Sakakibara, K.J. Edwards, and B. Hirel. (2006). Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell 18:3252-3274.
  • Martin, O., Hospital, F. (2006). Two- and Three-Locus Tests for Linkage Analysis Using Recombinant Inbred Lines. Genetics 173, 451-459.
  • Nadot, S., Forchioni, A., Penet, L., Sannier, J.,Ressayre, A. (2006) Links between early pollen development and aperture pattern in monocots. Protoplasma, 228 55–64.
  • Pauwels M., Frérot H., Bonnin I. and Saumitou-Laprade P. (2006). A broad-scale analysis of population differentiation for Zn-tolerance in an emerging model species for tolerance study : A. halleri (Brassicaceae). Journal of Evolutionary Biology 19: 1838-1850.
  • Pelleschi, S., Leonardi, A., Rocher, J. P., Cornic, G., de Vienne, D., Thevenot, C.,Prioul, J.-L. (2006) Analysis of the relationships between growth, photosynthesis and carbohydrate metabolism using quantitative trait loci (QTLs) in young maize plants subjected to water deprivation. Molecular Breeding, 17 21–39.
  • Pommel, B., Gallais, A., Coque, M., Quillère, I., Hirel, B., Prioul, J.-L., Andrieu, B. (2006). Carbon and Nitrogen allocation and grain filling in three maize hybrids differing in leaf senescence. Europ. J. Agronomy 24, 203-211.
  • Sorin, C., Négroni, L., Balliau, T., Corti, H., Jacquemot, M.-P., Davanture, M., Sandberg, G., Zivy, M.,Bellini, C. (2006) Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development. Plant Physiol, 140 349–364.
  • Sorin, C., Négroni, L., Balliau, T., Corti, H., Jacquemot, M.-P., Davanture, M., Sandberg, G., Zivy, M.,Bellini, C. (2006) Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development. Plant Physiol, 140 349–364.
  • Vitte, C.,Bennetzen, J. (2006) Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc Natl Acad Sci U S A, 103 17638–17643.
   

2005

  • Albertin, W., Brabant, P., Catrice, O., Eber, F., Jenczewski (ou y), E., Chèvre, A.-M. and Thiellement, H. (2005). Autopolyploidy in cabbage (Brassica Oleracea L.) does not alter significantly the proteome of green tissues. Proteomics 5, 2131-2139.
  • Alix, K., Ryder, C.D., Moore, J., King, G.J., Heslop-Harrison, J.S. (2005). The Genomic Organization of Retrotransposons in Brassica oleracea. Plant Mol. Biol. 59, 839-851.
  • Charcosset A. (2005) Marker Assisted Selection in Breeding Hybrid Crops. Encyclopaedia of Plant and Crop Sci. : 1-4.
  • Chardon, F. and Damerval, C. (2005). Phylogenomic analysis of the PEBP gene family in Cereals. J. mol. evol. 61, 579-590.
  • Chardon, F., Hourcade, D., Combes, V. and Charcosset, A. (2005) Mapping of a spontaneous mutation for early flowering time in maize highlights contrasting allelic series at two-linked QTL on chromosome 8. Theor. Appl. Genet. 112, 1-11.
  • Ducruet J.M., Roman M., Havaux M., Janda T., Gallais A. (2004). Cyclic electron flow around PSI monitored by afterglow luminescence in leaves of maize inbred lines (Zea mays L.). Correlation with chilling tolerance. Planta. 221, 567-579.
  • Falque, M. (2005). IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains. Bioinformatics 21, 3441-3442.
  • Falque, M., Décousset, L., Dervins, D., Jacob, AM., Joets, J., Martinant, J.P., Raffoux, X., Ribière, N., Ridel, C., Samson, D., Charcosset, A., Murigneux, A. (2005). Linkage mapping of 1454 new maize candidate gene Loci. Genetics 170, 1957-1966.
  • Ferry-Dumazet, H., Houel, G., Montalent, P., Moreau, Luc, Langella, O., Vincent, D., Lalanne, C., de Daruvar, A., Plomion, C., Zivy, M. and Joets, J. (2004). PROTICdb : A web-based application to store, track, query, and compare plant proteome data. Proteomics 5,2069-2081.
  • Gion, J.-M., Lalanne, C., Provost, G. L., Ferry-Dumazet, H., Paiva, J., Chaumeil, P., Frigerio, J.-M., Brach, J. J., Barré, A., de Daruvar, A., Claverol, S., Bonneu, M., Sommerer, N., Négroni, L.,Plomion, C. (2005) The proteome of maritime pine wood forming tissue. Proteomics, 5 3731–3751.
  • Gallais, A., Coque, M. (2005). Genetic variation and selection for nitrogen use efficiency in maize: a synthesis. Maydica 50, 531-547.
  • Gouesnard B., Dallard J., Bertin P., Boyat A., Charcosset A.(2005) European maize landraces: genetic diversity, core collection definition and methodology of use. Maydica, 50:225-234, 50^th anniversary issue, soumis sur invitation
  • Henry, A.M., D. Manicacci, M. Falque & C. Damerval (2005). Modular evolution in the Opaque-2 gene in Zea mays L. J. Mol. Evol 61: 551-558.
  • Landry, J., Damerval, C., Azevedo, R. A.,Delhaye, S. (2005) Effect of the opaque and floury mutations on the accumulation of dry matter and protein fractions in maize endosperm. Plant Physiol Biochem, 43 549–556.
  • Massonneau, A., Condamine, P., Wisniewski, J., Zivy, M.,Rogowsky, P. (2005) Maize cystatins respond to developmental cues, cold stress and drought. Biochim Biophys Acta, 1729 186–199.
  • Pauwels, M., Saumitou-Laprade, P., Holl, A.C., Petit, D., Bonnin, I. (2005). Multiple origin of metallicolous populations of the pseudometallophyte arabidopsis halleri (Brassicaceae) in central Europe: the cpDNA testimony. Mol. Ecol. 14, 4403-4414.
  • Penet, L., Nadot, S., Ressayre, A., Forchioni, A., Dreyer, L.,Gouyon, P. H. (2005) Multiple developmental pathways leading to a single morph: Monosulcate pollen (examples from the Asparagales). Ann Bot (Lond), 95 331–343.
  • Servin B. (2005). Using markers to reduce the variation in the genomic composition in marker assisted backcrossing. Genet. Res. 85, 151-157
  • Thévenot, C., Simond-Côte, E., Reyss, A., Manicacci, D., Trouverie, J., le Guilloux, M., Ginhoux, V., Sidicina, F.,Prioul, J.-L. (2005) QTLs for enzyme activities and soluble carbohydrates involved in starch accumulation during grain filling in maize. J Exp Bot, 56 945–958.
  • Valot, B., Dieu, M., Recorbet, G., Raes, M., Gianinazzi, S.,Dumas-Gaudot, E. (2005) Identification of membrane-associated proteins regulated by the arbuscular mycorrhizal symbiosis. Plant Mol Biol, 59 565–580.
  • Vincent, D., Lapierre, C., Pollet, B., Cornic, G., Negroni, L. and Zivy M. (2004). Water deficits affect caffeate O-methyltransferase, lignification and related enzymes in maize leaves : a proteomic investigation. Plant Physiol. 137, 949-960.
  • Welcker, C., Thé, C., Andréau, B., De Leon, C., Parentoni, S. N., Bernal, J., Félicité, J., Zonkeng, C., Salazar, F., Narro, L., Charcosset, A., Horst, W. J. (2005). Heterosis and combining ability for maize adaptation to tropical acid soils: implications for future breeding stategies. Crop Sci. 45, 2405-2413.
  • Yamasaki, M., Tenaillon, M. I., Vroh BI, I., Schroeder, S. G., Sanchez-Villeda, H., Doebley, J.F., Gaut, B. S., McMullen, M. D. (2005). A Large-Scale Screen for Artificial Selection in Maize Identifies Candidate Agronomic Loci for Domestication and Crop Improvement. Plant Cell 17, 2859-2872.
  • *Coursol S, Le Stunff H, Lynch DV, Gilroy S, Assmann SM, Spiegel S (2005) Arabidopsis sphingosine kinase and the effects of phytosphingosine-1-phosphate on stomatal aperture. Plant Physiol. 137(2):724-37.
  • *Ressayre, A., Dreyer, L., Triky-Teurtroy, S., Forchioni S. and Nadot, S. (2005). Post-meiotic cytokinesis and pollen aperture ontogeny : comparison of development in for species differing in aperture pattern. Am. J. Bot. 92: 576-583
  • *Sicard,D., Nanni, L., and Porfiri, O., Bulfon, D. and Papa, R. (2005). Genetic diversity of Phaseolus vulgaris L. and P. coccineus landraces in central Italy. Plant Breeding 124, 464-472.
  • *Vitte, C.,Panaud, O. (2005) LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model. Cytogenet Genome Res, 110 91–107.
   

2004

  • Arcade, A., Labourdette, A., Falque, M., Mangin, B., Chardon, F., Charcosset, A. and Joets, J. (2004). BioMercator : integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20(14), 2324-2326.
  • Azevedo, R.A., Damerval, C., Lea P.J., Landry, J., Bellato, C.M., Meinhardt, L.W., Le Guilloux, M., Delhaye, S., Toro A.A., Gaziola, S.A., Varisi, V.A. and Gratão,P.L. (2004). Genetic control of lysine metabolism in maize endosperm mutants. Functional plant biology 31, 339-348.
  • Azevedo, R.A., Lea P.J., Damerval, C., Landry, J., Bellato, C.M., Meinhardt, L.W., Le Guilloux, M., Delhaye, S., Varisi, V.A. Gaziola, S.A., Gratão,P.L. and Toro A.A., (2004). Regulation of lysine metabolism and endosperm protein synthesis by the opaque-5 and opaque-7 maize mutations. J. Agr. Food Chem. 52, 4865-4871.
  • Bahrman, N., Négroni, L., Jaminon, O. and Le Gouis, J. (2004). Wheat leaf proteome analysis using sequence data of proteins separated by two-dimensional electrophoresis. Proteomics 4, 2672-2684.
  • Barrière, Y., Emile, J.C., Traineau, R., Surault, F., Briand, M. and Gallais, A. (2004). Genetic variation for organic matter and cell wall digestibility in silage maize. Lessons from a 34-year long experiment with sheep in digestibility crates. Maydica 49-2, 115-126.
  • Charcosset A. and Moreau L. (2004). Use of molecular markers for the development of new cultivars and the evaluation of genetic diversity. Euphytica 137, 81-94.
  • Chardon, F., Virlon, B., Moreau, L., Falque, M., Joets, J., Decousset, L., Murigneux, A., and Charcosset, A. (2004). Genetic architecture of flowering time in maize as inferred from QTL meta-analysis and synteny conservation with rice genome Genetics 168 : 2169-2185.
  • Crepieux, S., Lebreton, C., .Servin, B. and Charmet, G. (2004). Quantitative Trait Loci (QTL) Detection in Multicross Inbred Designs: Recovering QTL Identical-by-Descent Status Information From Marker Data Genetics 168: 1737-1749 .
  • Degen, T., Dillmann, D., Marion-Poll, F. and Turnings, T. (2004). High genetic variability of herbivore-induced volatile emission within a broad range of maize inbred lines. Plant Physiol. 135, 1928-1938.
  • Fiévet, J., Dillmann, C., Lagniel, G., Davanture, M., Négroni, L., Labarre, J. and de Vienne, D. (2004). Assessing factors for reliable quantitative proteomics based on two-dimensional gel electrophoresis. Proteomics 4, 1939-1949.
  • Gallais, A. and Hirel, B. (2004). An approach of the genetics of nitrogen use efficiency in maize. J. Exp. Bot. 55, 295-306.
  • Goldringer, I. and Bataillon, T. (2004). On the distribution of temporal variations in allele frequency : consequences for the estimation of effective population size and the detection of loci undergoing selection. Genetics 168, 563-568.
  • Guillet-Claude, C., Birolleau-Touchard, C., Manicacci, D., Fourmann, M., Barraud, S., Carret, V., Martinant, J.P., Barrière, Y. (2004). Genetic diversity associated with variation in silage corn digestibility for three O-methyltransferase genes involved in lignin biosynthesis. Theor. Appl. Genet. 110(1):126-35.
  • Guillet-Claude, C., Birolleau-Touchard, C., Manicacci, D., Rogowsky, P.M., Rigau, J., Murigneux, A., Martinant, J.P. and Barrière, Y. (2004). Nucleotide diversity of the ZmPox3 maize peroxidase gene : relationships between a MITE insertion in exon 2 and variation in forage maize digestibility. BMC Genet. 5-19.
  • Hanocq, E., Niarquin, M., Rousset, M., Charmet, G., and Le Gouis, J. (2004). Detection and mapping of QTL for earliness constituents in a bread wheat recombinant inbred lines population. Theor. Appl. Genet. 110, 106-115.
  • Jolivet, P., Roux, E., d'Andrea, S., Davanture, M., Negroni, L., Zivy, M. and Chardot, T., (2003) Protein composition of oil bodies in Arabidopsis thaliana ecotype WS. Plant Physiol. and Bioch. 42, 501-509.
  • Lemaire, C., Guillot, A., Négroni, L., Sellem, C., Zivy, M., Sainsard-Chanet, A.,Dujardin, G. (2004) Analysis of the subunit composition of mitochondrial respiratory complexes from different species. Biochimica Et Biophysica Acta-Bioenergetics, 1657 36–36.
  • Lion, S., Gabriel, F., Bost, B., Fiévet, J., Dillmann, C. and de Vienne, D. (2004). Taking into account correlations between enzymes : an extension to metabolic control theory. Eur. J. Biochem., 271, 4375-4391.
  • Massonneau, A., Houba-Hérin, N., Pethe, C., Madzak, C., Falque, M., Mercy, M., Kopecny, D., Majira, A., Rogowsky, P. and Laloue, M. (2004). Maize cytokinin oxidase genes: differential expression and cloning of two new cDNAs. J. Exp. Bot.. 55(408), 2549-2557.
  • Méchin, V., Balliau, T., Château-Joubert, S., Davanture, M., Langella, O., Négroni, L., Prioul, J.-L., Thévenot, C., Zivy, M. and Damerval, C. (2004). A two dimensional proteome map of maize endosperm. Phytochemistry 65, 1609-1618.
  • Moreau, L., Charcosset, A.,Gallais, A. (2004) Experimental evaluation of several cycles of marker-assisted selection in maize. Euphytica, 137 111–118.
  • Moreau L., Charcosset A. and Gallais, A. (2004). Use of trial clustering to study QTL x environment effects for grain yield and related traits in maize. Theor. Appl. Genet. 110(1):92-105.
  • Porcher, E., Giraud, T., Goldringer, I. and Lavigne, C. (2004). Experimental demonstration of a causal relationship between heterogeneity of selection and genetic differentiation in quantitative traits. Evolution 58, 1434-1445.
  • Riccardi, F., Gazeau, P., Jacquemot, M.-P., Vincent, D. and Zivy, M. (2004). Deciphering genetic variations of proteome responses to water deficit in maize leaves.Plant Physiol. Bioch. 42, 1003-1011.
  • Schiltz, S., Gallardo, K., Huart, M., Negroni, L., Sommerer, N. and Burstin, J. (2004). Proteome reference maps of vegetative tissues in Pea. An investigation of nitrogen mobilization from leaves during seed filling. Plant Physiol. 135, 2241-2260.
  • Servin, B., Martin, O. C., Mezard, M. and Hospital, F. (2004). Towards a theory of marker assisted gene pyramiding. Genetics 168, 513-523.
  • Tenaillon, M. I., U'ren, J., Tenaillon, O. and Gaut, B. S. (2004). Selection versus demography : a multilocus investigation of the domestication process in maize. Mol. Biol. Evol. 21, 1214-1225.
  • Thabuis, A., Palloix, A., Servin, B., Daubèze, A.M., Signoret, P., Hospital, F. and Lefebvre, V. (2004). Marker-assisted introgression of 4 Phytophthora capsici resistance QTL alleles into a bell pepper line : validation of additive and epistatic effects. Mol. Breeding 14(1), 9-20.
  • Trouverie, J., Chateau-Joubert, S., Thévenot, C., Jacquemot, M.-P. and Prioul, J.-L. (2004). Regulation of vacuolar invertase by abscisic acid or glucose in leaves and roots from maize plantlets. Planta 219, 894-905.
  • Van Rossum, F., Bonnin, I., Fénart, S., Pauwels, M., Petit, D. and Saumitou-Laprade, P. (2004). Spatial genetic structure within a metallicolous population of Arabidopsis halleri, a clonal, self-incompatible and heavy-metal-tolerant species. Mol. Ecol. 13, 2959-2967.
  • *Alix, K., Heslop-Harrison, J.S. (2004). The diversity of retroelements in diploid and allotetraploid Brassica species. Plant Mol. Biol. 54, 895-909.
  • Dumas-Gaudot, E., Amiour, N., Weidmann, S., Bestel-Corre, G., Valot, B., Lenogue, S., Gianinazzi-Pearson, V.,Gianinazzi, S. (2004) A technical trick for studying proteomics in parallel to transcriptomics in symbiotic root-fungus interactions. Proteomics, 4 451–453.
  • Dumas-Gaudot, E., Valot, B., Bestel-Corre, G., Recorbet, G., St-Arnaud, M., Fontaine, B., Dieu, M., Raes, M., Saravanan, R. S.,Gianinazzi, S. (2004) Proteomics as a way to identify extra-radicular fungal proteins from Glomus intraradices - RiT-DNA carrot root mycorrhizas. Fems Microbiology Ecology, 48 401–411.
  • Jenczewski, E., *Alix, K. (2004). From diploids to allopolyploids: the emergence of efficient pairing control genes in plants. Crit. Rev. Plant. Sci. 23, 21-45.
  • Osuna, L.,* Coursol, S., Pierre, J.-N. and Vidal, J. (2004). A Ca(2+)-dependent protein kinase with characteristics of protein kinase C in leaves and mesophyll cell protoplasts from Digitaria sanguinalis : possible involvement in the C(4)-phosphoenolpyruvate carboxylase phosphorylation cascade. Biochem. Bioph. Res. Co.314, 428-433.
  • *Vasut, R.J., Van Dijk, P.J., Falque, M., Travnicek, B. and De Jong, J.H. (2004). Development and characterization of nine microsatellite markers in Taraxacum (Asteraceae). Mol. Ecol. 4, 645-648.
  • *Pennet, L., Nadot, S., Ressayre, A., Forchioni S., Dreyer, L. and Gouyon, P.- H. (2004) Multiple developmental pathways leading to a single morph : monosulcate pollen (examples from the Asparagales). Ann. Bot. London 95(2):331-43.
  • *Valot, B., Gianinazzi, S.,Dumas-Gaudot, E. (2004) Sub-cellular proteomic analysis of a Medicago truncatula root microsomal fraction. Phytochemistry, 65 1721–1732.
  • *Vitte, C., Ishii, T., Lamy, F., Brar, D.,Panaud, O. (2004) Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.). Mol Genet Genomics, 272 504–511.
   

2003

  • Albini, G., Falque M. and Joets, J. (2003). ActionMap : a web-based software that automates loci assignments to framework maps. Nucleic Acids Res. 31, 3815-3818.
  • Azevedo R.A., Damerval C., Landry J., Lea P.J., Bellato C.M., Meinhardt L.W., Le Guilloux M., Delhaye S., Toro A.A., Gaziola S.A. and Berdejo B.D.A. (2003). Regulation of maize lysine metabolism and endosperm protein synthesis by opaque and floury mutations. Eur. J. Biochem. 270, 4898-1908.
  • Bahrman N., Le Gouis J., Negroni L., Amilhat L., Leroy P., Lainé A.-L. and Jaminon O. (2003). Differential protein expression assessed by two-dimensional gel electrophoresis for two wheat varieties grown at four nitrogen levels. Proteomics 4, 709-719.
  • Damerval, C. and Manuel, M. (2003). Independent evolution of CYCLOIDEA-like sequences in angiosperm taxa. C. R. Palévol 2, 241-250.
  • Dubois, F., Terce-Laforgue, T., Gonzales-Moro, M.B., Estavillo J.M., Sangwan R., Gallais A. and Hirel, B. (2003). Glutamate dehydrogenase in plants : is there a new story for an old enzyme ? Plant Physiol. Bioch. 41, 565-576.
  • Landry, J., Delhaye, S. and Damerval, C. (2003). Protein distribution pattern in floury and vitreous endosperm of maize grain. Cereal Chem. 81,153-158.
  • Méchin, V., Consoli, L., Le Guilloux, M. and Damerval, C. (2003). An efficient solubilization buffer for plant proteins focused in immobilized pH gradients. Proteomics 3 , 1299-1302.
  • Moreau, L., Charcosset, A. and Gallais, A. (2003). Experimental evaluation of several cycles of marker-assisted selection in maize. Euphytica 137, 111-118.
  • Quemener B., Desire C., Lahaye M., Debrauwer L. and Negroni L. (2003). Structural characterisation by both positive- and negative-ion electrospray mass spectrometry of partially methyl-esterified oligogalacturonides purified by semi-preparative high-performance anion-exchange chromatography. Eur. J. Mass. Spectrom. 9, 45-60.
  • Rebourg, C., Chastanet, M., Gouesnard, B., Welcker, C., Dubreuil, P. and Charcosset, A. (2003). Maize introduction in Europe : The history reviewed in the light of molecular data. Theor. Appl. Genet. 106, 895-903.
  • Reymond, M., Muller, B., Leonardi, A., Charcosset, A., and Tardieu, F. (2003). Combining Quantitative Trait Loci Analysis and an Ecophysiological Model to Analyze the Genetic Variability of the Responses of Maize Leaf Growth to Temperature and Water Deficit. Plant Physiol. 131, 664-675.
  • *Coursol, S., Fan, L.-M., Le Stunff, H., Spiegel, S., Gilroy, S. and Assmann, S.M. (2003). Sphingolipid signalling in Arabidopsis guard cells involves heterotrimeric G proteins. Nature 423, 651-654.
  • *Ressayre, A., Mignot, A., Yakovlev, S. and Raquin, C. (2003). Postmeiotic cytokinesis and pollen aperture number determination in eudicots : effect of the cleavage wall number. Protoplasma 221, 257-268.
  • *Sicard, D., Legg, E., Brown, S., Babu, N.K., Ochoa, O. and Michelmore, R.W. (2003). A genetic map of the lettuce downy mildew pathogen, Bremia lactucae, constructed from molecular markers and avirulence genes. Fungal Genet. Biol. 39 , 16-30.
  • *Van Der Hulst, R.G.M., Mes, T.H.M., Falque, M. Stam, P., Den Nijs, J.C.M., & Bachmann, K. (2003) Genetic structure of a population sample of apomictic dandelions. Heredity 90, 326–335
   

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